Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9445 | 3' | -56.2 | NC_002531.1 | + | 94836 | 1.12 | 0.001271 |
Target: 5'- aAGACACUGUGGCAUAUGGUGGCCCCCa -3' miRNA: 3'- -UCUGUGACACCGUAUACCACCGGGGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 42739 | 0.7 | 0.618068 |
Target: 5'- uGGACAgUUGUGGau--UGGUGGaaaCCCCg -3' miRNA: 3'- -UCUGU-GACACCguauACCACCg--GGGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 47233 | 0.7 | 0.638819 |
Target: 5'- uGACuuUGUGGUAgagcgGGUGGCUgCCg -3' miRNA: 3'- uCUGugACACCGUaua--CCACCGGgGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114645 | 0.69 | 0.710817 |
Target: 5'- ---gGCUGcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC-ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 35033 | 0.69 | 0.711829 |
Target: 5'- gAGGCACUGUGGCAguguacGGagacagccucgccugGGUCCUCu -3' miRNA: 3'- -UCUGUGACACCGUaua---CCa--------------CCGGGGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 12071 | 0.69 | 0.724915 |
Target: 5'- uAGACGCUGUGGCGgccgagcUGGgucucagcuacagucUaaguuuuuuugaGGCCCCCc -3' miRNA: 3'- -UCUGUGACACCGUau-----ACC---------------A------------CCGGGGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 42440 | 0.69 | 0.730909 |
Target: 5'- cAGAUuCUGuUGGUgaaagaGGUGGCCCCUa -3' miRNA: 3'- -UCUGuGAC-ACCGuaua--CCACCGGGGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 62152 | 0.68 | 0.764217 |
Target: 5'- uGcCGCUGUGGC-UGUGGUGaaggcuaaaaagcauGCUCCUg -3' miRNA: 3'- uCuGUGACACCGuAUACCAC---------------CGGGGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 42829 | 0.67 | 0.815868 |
Target: 5'- aGGugGCUGUuuuaugaugGGCuuggAUGG-GGUCCCUg -3' miRNA: 3'- -UCugUGACA---------CCGua--UACCaCCGGGGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 115854 | 0.67 | 0.81937 |
Target: 5'- uGGGgGCUGgccccguccccgggcUGGCuggcuaGGUGGCCCCg -3' miRNA: 3'- -UCUgUGAC---------------ACCGuaua--CCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114472 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114414 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114443 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114327 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114298 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114269 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114240 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114211 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114182 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 62764 | 0.67 | 0.82457 |
Target: 5'- cGACACUGUGGaaAUAUGGaaGCCgUCu -3' miRNA: 3'- uCUGUGACACCg-UAUACCacCGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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