miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9445 3' -56.2 NC_002531.1 + 42739 0.7 0.618068
Target:  5'- uGGACAgUUGUGGau--UGGUGGaaaCCCCg -3'
miRNA:   3'- -UCUGU-GACACCguauACCACCg--GGGG- -5'
9445 3' -56.2 NC_002531.1 + 47233 0.7 0.638819
Target:  5'- uGACuuUGUGGUAgagcgGGUGGCUgCCg -3'
miRNA:   3'- uCUGugACACCGUaua--CCACCGGgGG- -5'
9445 3' -56.2 NC_002531.1 + 12071 0.69 0.724915
Target:  5'- uAGACGCUGUGGCGgccgagcUGGgucucagcuacagucUaaguuuuuuugaGGCCCCCc -3'
miRNA:   3'- -UCUGUGACACCGUau-----ACC---------------A------------CCGGGGG- -5'
9445 3' -56.2 NC_002531.1 + 42440 0.69 0.730909
Target:  5'- cAGAUuCUGuUGGUgaaagaGGUGGCCCCUa -3'
miRNA:   3'- -UCUGuGAC-ACCGuaua--CCACCGGGGG- -5'
9445 3' -56.2 NC_002531.1 + 42829 0.67 0.815868
Target:  5'- aGGugGCUGUuuuaugaugGGCuuggAUGG-GGUCCCUg -3'
miRNA:   3'- -UCugUGACA---------CCGua--UACCaCCGGGGG- -5'
9445 3' -56.2 NC_002531.1 + 62764 0.67 0.82457
Target:  5'- cGACACUGUGGaaAUAUGGaaGCCgUCu -3'
miRNA:   3'- uCUGUGACACCg-UAUACCacCGGgGG- -5'
9445 3' -56.2 NC_002531.1 + 114327 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114356 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114385 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114414 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114472 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114443 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114298 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114269 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114240 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114211 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114182 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 114153 0.67 0.82457
Target:  5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3'
miRNA:   3'- ucugUGAC--ACCGuauaCCACCGGGGg -5'
9445 3' -56.2 NC_002531.1 + 103967 0.67 0.82457
Target:  5'- aGGAgGaaGcGGCAgcgGUGGaagugGGCCCCCu -3'
miRNA:   3'- -UCUgUgaCaCCGUa--UACCa----CCGGGGG- -5'
9445 3' -56.2 NC_002531.1 + 94836 1.12 0.001271
Target:  5'- aAGACACUGUGGCAUAUGGUGGCCCCCa -3'
miRNA:   3'- -UCUGUGACACCGUAUACCACCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.