miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 35382 0.67 0.996138
Target:  5'- uGGAGCCGcuAUCUACCCcUCAGcACUu -3'
miRNA:   3'- cCUUCGGUuuUAGGUGGGuGGUU-UGG- -5'
9447 5' -48.3 NC_002531.1 + 124684 0.67 0.996138
Target:  5'- ---uGCCAAcuUCCACCCGCauuACa -3'
miRNA:   3'- ccuuCGGUUuuAGGUGGGUGguuUGg -5'
9447 5' -48.3 NC_002531.1 + 43319 0.67 0.996138
Target:  5'- --uGGUUAGAAUCCugCUAuCCAAGCa -3'
miRNA:   3'- ccuUCGGUUUUAGGugGGU-GGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 1418 0.67 0.996138
Target:  5'- uGAAGCCAgGAAUCUuuucuCCCGCUuGugCa -3'
miRNA:   3'- cCUUCGGU-UUUAGGu----GGGUGGuUugG- -5'
9447 5' -48.3 NC_002531.1 + 87494 0.68 0.995461
Target:  5'- uGGAcGCCAgcGAGUCCcucaagcaGCCaGCCGAACa -3'
miRNA:   3'- -CCUuCGGU--UUUAGG--------UGGgUGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 81698 0.68 0.995461
Target:  5'- -aAAGCCAcagcccgcagcAGGUCCACuccauCCACCGgcuAGCCa -3'
miRNA:   3'- ccUUCGGU-----------UUUAGGUG-----GGUGGU---UUGG- -5'
9447 5' -48.3 NC_002531.1 + 83778 0.68 0.995461
Target:  5'- -aGAGCCAAGAcCCcagagGCCCACUAAAa- -3'
miRNA:   3'- ccUUCGGUUUUaGG-----UGGGUGGUUUgg -5'
9447 5' -48.3 NC_002531.1 + 35444 0.68 0.99469
Target:  5'- aGGAGCUGAGGUUCAgCCACCuGGUCg -3'
miRNA:   3'- cCUUCGGUUUUAGGUgGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 97526 0.68 0.99469
Target:  5'- -cGAGCgAu-AUCCAgCCACUAGACUa -3'
miRNA:   3'- ccUUCGgUuuUAGGUgGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 2818 0.68 0.99469
Target:  5'- ---cGCUAAucuGGUCUugCUACUAAACCg -3'
miRNA:   3'- ccuuCGGUU---UUAGGugGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 116745 0.68 0.992831
Target:  5'- cGGccGCCAAAAcaCCAUCCAC-AGACUa -3'
miRNA:   3'- -CCuuCGGUUUUa-GGUGGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 115711 0.68 0.992831
Target:  5'- cGggGCCAGcccCCACCUACauaaauUAAACCc -3'
miRNA:   3'- cCuuCGGUUuuaGGUGGGUG------GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 20517 0.68 0.991724
Target:  5'- gGGAAGCCAc--UCU-CCC-CCAGACa -3'
miRNA:   3'- -CCUUCGGUuuuAGGuGGGuGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 21683 0.68 0.991724
Target:  5'- gGGAGcauGCCAGAggCCACuCCAgUAAAUCc -3'
miRNA:   3'- -CCUU---CGGUUUuaGGUG-GGUgGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 61473 0.68 0.991724
Target:  5'- uGGAAGCCAccaa-CACCCcaaaguaaaauCCAAACUg -3'
miRNA:   3'- -CCUUCGGUuuuagGUGGGu----------GGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 48707 0.68 0.991724
Target:  5'- uGGggGCCuugugCCACUCGgCAuagucuGCCa -3'
miRNA:   3'- -CCuuCGGuuuuaGGUGGGUgGUu-----UGG- -5'
9447 5' -48.3 NC_002531.1 + 20227 0.69 0.990486
Target:  5'- ----aCCA--GUCCACUgGCCAGGCCu -3'
miRNA:   3'- ccuucGGUuuUAGGUGGgUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 100895 0.69 0.990486
Target:  5'- uGGAA-CCAucg-CCACCCACCucauAAACUc -3'
miRNA:   3'- -CCUUcGGUuuuaGGUGGGUGG----UUUGG- -5'
9447 5' -48.3 NC_002531.1 + 89925 0.69 0.989106
Target:  5'- gGGAuGCuCAAAuucacAUCCuCCCACCcuuGCCa -3'
miRNA:   3'- -CCUuCG-GUUU-----UAGGuGGGUGGuu-UGG- -5'
9447 5' -48.3 NC_002531.1 + 84805 0.69 0.98896
Target:  5'- aGGAgaccacAGCCuuAcUCUGCCCgaaggacagcgccGCCAAACCa -3'
miRNA:   3'- -CCU------UCGGuuUuAGGUGGG-------------UGGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.