miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 30704 0.66 0.999121
Target:  5'- --cAGUCAcGAaCCauuGCUCACCAAACCa -3'
miRNA:   3'- ccuUCGGUuUUaGG---UGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 35326 0.66 0.999288
Target:  5'- cGAAGCCcAGGUCgGCUggguCACUGGACUa -3'
miRNA:   3'- cCUUCGGuUUUAGgUGG----GUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 35382 0.67 0.996138
Target:  5'- uGGAGCCGcuAUCUACCCcUCAGcACUu -3'
miRNA:   3'- cCUUCGGUuuUAGGUGGGuGGUU-UGG- -5'
9447 5' -48.3 NC_002531.1 + 35444 0.68 0.99469
Target:  5'- aGGAGCUGAGGUUCAgCCACCuGGUCg -3'
miRNA:   3'- cCUUCGGUUUUAGGUgGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 39196 0.67 0.997691
Target:  5'- aGGGuAGUCuu--UCCugCCGCCAuacACCc -3'
miRNA:   3'- -CCU-UCGGuuuuAGGugGGUGGUu--UGG- -5'
9447 5' -48.3 NC_002531.1 + 40107 0.66 0.998921
Target:  5'- gGGGAGUaac-AUCCGCCCcCCucaucguACCa -3'
miRNA:   3'- -CCUUCGguuuUAGGUGGGuGGuu-----UGG- -5'
9447 5' -48.3 NC_002531.1 + 42541 0.73 0.914633
Target:  5'- -aAGGCCAugcaGAAauacuuucucauguuUCCACCCGCCGAcCCa -3'
miRNA:   3'- ccUUCGGU----UUU---------------AGGUGGGUGGUUuGG- -5'
9447 5' -48.3 NC_002531.1 + 43319 0.67 0.996138
Target:  5'- --uGGUUAGAAUCCugCUAuCCAAGCa -3'
miRNA:   3'- ccuUCGGUUUUAGGugGGU-GGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 46303 0.66 0.999288
Target:  5'- cGGAGGCgCuag--CCACUC-CCAGGCa -3'
miRNA:   3'- -CCUUCG-GuuuuaGGUGGGuGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 47052 0.67 0.997245
Target:  5'- gGGAuGGCCuGAGAUCCagGCCCAUggauaacaUGAACCu -3'
miRNA:   3'- -CCU-UCGG-UUUUAGG--UGGGUG--------GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 47403 0.69 0.988207
Target:  5'- aGGccGCCucuucggcagCCACCCGCUcuACCa -3'
miRNA:   3'- -CCuuCGGuuuua-----GGUGGGUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 48707 0.68 0.991724
Target:  5'- uGGggGCCuugugCCACUCGgCAuagucuGCCa -3'
miRNA:   3'- -CCuuCGGuuuuaGGUGGGUgGUu-----UGG- -5'
9447 5' -48.3 NC_002531.1 + 49062 0.79 0.655045
Target:  5'- gGGGugGGCCAGAuAUCuCACCCGCCAGGgCu -3'
miRNA:   3'- -CCU--UCGGUUU-UAG-GUGGGUGGUUUgG- -5'
9447 5' -48.3 NC_002531.1 + 53567 0.73 0.905692
Target:  5'- --uAGCCAAGAg-CAUCCGCCAAGCa -3'
miRNA:   3'- ccuUCGGUUUUagGUGGGUGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 54232 0.7 0.981981
Target:  5'- aGGAAGUguA---CCACCCGCUAA-CCg -3'
miRNA:   3'- -CCUUCGguUuuaGGUGGGUGGUUuGG- -5'
9447 5' -48.3 NC_002531.1 + 55159 0.73 0.929844
Target:  5'- aGGAGCCAcc-UCCGCUCuCUAGACCc -3'
miRNA:   3'- cCUUCGGUuuuAGGUGGGuGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 56674 0.73 0.918304
Target:  5'- --cAGCCGuGAga-ACCCACCAGGCCu -3'
miRNA:   3'- ccuUCGGUuUUaggUGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 58126 0.66 0.999121
Target:  5'- uGGGuuCCAAAgcgGUCC-CCCACgGAcACCg -3'
miRNA:   3'- -CCUucGGUUU---UAGGuGGGUGgUU-UGG- -5'
9447 5' -48.3 NC_002531.1 + 58295 0.67 0.99673
Target:  5'- gGGGAGCUuGAGaCCACCCucacCCAAugGCg -3'
miRNA:   3'- -CCUUCGGuUUUaGGUGGGu---GGUU--UGg -5'
9447 5' -48.3 NC_002531.1 + 61473 0.68 0.991724
Target:  5'- uGGAAGCCAccaa-CACCCcaaaguaaaauCCAAACUg -3'
miRNA:   3'- -CCUUCGGUuuuagGUGGGu----------GGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.