miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 1418 0.67 0.996138
Target:  5'- uGAAGCCAgGAAUCUuuucuCCCGCUuGugCa -3'
miRNA:   3'- cCUUCGGU-UUUAGGu----GGGUGGuUugG- -5'
9447 5' -48.3 NC_002531.1 + 2818 0.68 0.99469
Target:  5'- ---cGCUAAucuGGUCUugCUACUAAACCg -3'
miRNA:   3'- ccuuCGGUU---UUAGGugGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 5998 0.67 0.997691
Target:  5'- aGAAuuGCCuacauacCCACCUACCAuGACCa -3'
miRNA:   3'- cCUU--CGGuuuua--GGUGGGUGGU-UUGG- -5'
9447 5' -48.3 NC_002531.1 + 10057 0.75 0.827573
Target:  5'- gGGGccGGCCAGAGagUACCCACUGAAUCc -3'
miRNA:   3'- -CCU--UCGGUUUUagGUGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 10597 0.7 0.977317
Target:  5'- -cGGGCCGAGGcCCauGCCCACCAuagaacaagucaGGCCu -3'
miRNA:   3'- ccUUCGGUUUUaGG--UGGGUGGU------------UUGG- -5'
9447 5' -48.3 NC_002531.1 + 11439 0.66 0.998921
Target:  5'- aGGAAGCCu---UCgUACCCAacguaaAGGCCg -3'
miRNA:   3'- -CCUUCGGuuuuAG-GUGGGUgg----UUUGG- -5'
9447 5' -48.3 NC_002531.1 + 13178 0.66 0.998684
Target:  5'- -cGAGUCAgaGAAUCCAgCCCAgggcuaCAAGCCc -3'
miRNA:   3'- ccUUCGGU--UUUAGGU-GGGUg-----GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 17334 0.7 0.979749
Target:  5'- --cAGCCuGAAAUCCAU--GCCGAGCCg -3'
miRNA:   3'- ccuUCGG-UUUUAGGUGggUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 19644 0.66 0.998684
Target:  5'- --cAGCCAu--UCCcCCCACCGcauucuACCu -3'
miRNA:   3'- ccuUCGGUuuuAGGuGGGUGGUu-----UGG- -5'
9447 5' -48.3 NC_002531.1 + 20227 0.69 0.990486
Target:  5'- ----aCCA--GUCCACUgGCCAGGCCu -3'
miRNA:   3'- ccuucGGUuuUAGGUGGgUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 20517 0.68 0.991724
Target:  5'- gGGAAGCCAc--UCU-CCC-CCAGACa -3'
miRNA:   3'- -CCUUCGGUuuuAGGuGGGuGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 21011 0.66 0.998658
Target:  5'- ---uGCCAAGAUUgcaaacaUACCCACCAGGa- -3'
miRNA:   3'- ccuuCGGUUUUAG-------GUGGGUGGUUUgg -5'
9447 5' -48.3 NC_002531.1 + 21683 0.68 0.991724
Target:  5'- gGGAGcauGCCAGAggCCACuCCAgUAAAUCc -3'
miRNA:   3'- -CCUU---CGGUUUuaGGUG-GGUgGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 21927 0.7 0.981981
Target:  5'- gGGAGGCUA--GUgCAUCC-CCAAACUu -3'
miRNA:   3'- -CCUUCGGUuuUAgGUGGGuGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 22005 0.67 0.996138
Target:  5'- aGGAGGUCAAAGUUgcaGCCCA---GACCc -3'
miRNA:   3'- -CCUUCGGUUUUAGg--UGGGUgguUUGG- -5'
9447 5' -48.3 NC_002531.1 + 23539 0.67 0.997245
Target:  5'- aGAGGCCAAcAUUC-CCCACaauGACa -3'
miRNA:   3'- cCUUCGGUUuUAGGuGGGUGgu-UUGg -5'
9447 5' -48.3 NC_002531.1 + 23825 0.67 0.998075
Target:  5'- -aAAGCCucuAAAUCUuccgGCCCAUCucAGCCa -3'
miRNA:   3'- ccUUCGGu--UUUAGG----UGGGUGGu-UUGG- -5'
9447 5' -48.3 NC_002531.1 + 24387 0.75 0.827573
Target:  5'- -uGGGCCAGAAgaCUGCCCGCCuAACCu -3'
miRNA:   3'- ccUUCGGUUUUa-GGUGGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 24908 0.66 0.999121
Target:  5'- --uGGCCucAcgCCACCCagGCUAAAUCu -3'
miRNA:   3'- ccuUCGGuuUuaGGUGGG--UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 24953 0.67 0.998075
Target:  5'- uGGAcAGCUAAAuaacuagCCACCaugCAgCAGACCa -3'
miRNA:   3'- -CCU-UCGGUUUua-----GGUGG---GUgGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.