miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 81698 0.68 0.995461
Target:  5'- -aAAGCCAcagcccgcagcAGGUCCACuccauCCACCGgcuAGCCa -3'
miRNA:   3'- ccUUCGGU-----------UUUAGGUG-----GGUGGU---UUGG- -5'
9447 5' -48.3 NC_002531.1 + 84805 0.69 0.98896
Target:  5'- aGGAgaccacAGCCuuAcUCUGCCCgaaggacagcgccGCCAAACCa -3'
miRNA:   3'- -CCU------UCGGuuUuAGGUGGG-------------UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 89925 0.69 0.989106
Target:  5'- gGGAuGCuCAAAuucacAUCCuCCCACCcuuGCCa -3'
miRNA:   3'- -CCUuCG-GUUU-----UAGGuGGGUGGuu-UGG- -5'
9447 5' -48.3 NC_002531.1 + 20227 0.69 0.990486
Target:  5'- ----aCCA--GUCCACUgGCCAGGCCu -3'
miRNA:   3'- ccuucGGUuuUAGGUGGgUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 100895 0.69 0.990486
Target:  5'- uGGAA-CCAucg-CCACCCACCucauAAACUc -3'
miRNA:   3'- -CCUUcGGUuuuaGGUGGGUGG----UUUGG- -5'
9447 5' -48.3 NC_002531.1 + 61473 0.68 0.991724
Target:  5'- uGGAAGCCAccaa-CACCCcaaaguaaaauCCAAACUg -3'
miRNA:   3'- -CCUUCGGUuuuagGUGGGu----------GGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 115711 0.68 0.992831
Target:  5'- cGggGCCAGcccCCACCUACauaaauUAAACCc -3'
miRNA:   3'- cCuuCGGUUuuaGGUGGGUG------GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 35444 0.68 0.99469
Target:  5'- aGGAGCUGAGGUUCAgCCACCuGGUCg -3'
miRNA:   3'- cCUUCGGUUUUAGGUgGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 97526 0.68 0.99469
Target:  5'- -cGAGCgAu-AUCCAgCCACUAGACUa -3'
miRNA:   3'- ccUUCGgUuuUAGGUgGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 54232 0.7 0.981981
Target:  5'- aGGAAGUguA---CCACCCGCUAA-CCg -3'
miRNA:   3'- -CCUUCGguUuuaGGUGGGUGGUUuGG- -5'
9447 5' -48.3 NC_002531.1 + 17334 0.7 0.979749
Target:  5'- --cAGCCuGAAAUCCAU--GCCGAGCCg -3'
miRNA:   3'- ccuUCGG-UUUUAGGUGggUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 10597 0.7 0.977317
Target:  5'- -cGGGCCGAGGcCCauGCCCACCAuagaacaagucaGGCCu -3'
miRNA:   3'- ccUUCGGUUUUaGG--UGGGUGGU------------UUGG- -5'
9447 5' -48.3 NC_002531.1 + 24387 0.75 0.827573
Target:  5'- -uGGGCCAGAAgaCUGCCCGCCuAACCu -3'
miRNA:   3'- ccUUCGGUUUUa-GGUGGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 10057 0.75 0.827573
Target:  5'- gGGGccGGCCAGAGagUACCCACUGAAUCc -3'
miRNA:   3'- -CCU--UCGGUUUUagGUGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 79112 0.74 0.884069
Target:  5'- -uAAGCCAGAagaccAUCCACaCCACCcagaaggAGACCa -3'
miRNA:   3'- ccUUCGGUUU-----UAGGUG-GGUGG-------UUUGG- -5'
9447 5' -48.3 NC_002531.1 + 53567 0.73 0.905692
Target:  5'- --uAGCCAAGAg-CAUCCGCCAAGCa -3'
miRNA:   3'- ccuUCGGUUUUagGUGGGUGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 100655 0.73 0.918304
Target:  5'- uGGAAGCCAuguGUCaccucaacuaugCACCUACUcAACCa -3'
miRNA:   3'- -CCUUCGGUuu-UAG------------GUGGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 123174 0.72 0.938808
Target:  5'- uGGaAAGUCAAAGcgacCCACCCcgggcuguugcaccACCAGGCCa -3'
miRNA:   3'- -CC-UUCGGUUUUa---GGUGGG--------------UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 61767 0.71 0.965424
Target:  5'- cGGAGCU--GGUCCACUgGCUAGACa -3'
miRNA:   3'- cCUUCGGuuUUAGGUGGgUGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 129478 0.71 0.968738
Target:  5'- aGGuccuuGGgCGGGGUCUugCCugCAGGCCc -3'
miRNA:   3'- -CCu----UCgGUUUUAGGugGGugGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.