miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 103563 1.15 0.006065
Target:  5'- aGGAAGCCAAAAUCCACCCACCAAACCc -3'
miRNA:   3'- -CCUUCGGUUUUAGGUGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 87254 0.84 0.40796
Target:  5'- aGGAGCCuaaAAAGUUCACCC-CCAAGCCg -3'
miRNA:   3'- cCUUCGG---UUUUAGGUGGGuGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 49062 0.79 0.655045
Target:  5'- gGGGugGGCCAGAuAUCuCACCCGCCAGGgCu -3'
miRNA:   3'- -CCU--UCGGUUU-UAG-GUGGGUGGUUUgG- -5'
9447 5' -48.3 NC_002531.1 + 24387 0.75 0.827573
Target:  5'- -uGGGCCAGAAgaCUGCCCGCCuAACCu -3'
miRNA:   3'- ccUUCGGUUUUa-GGUGGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 10057 0.75 0.827573
Target:  5'- gGGGccGGCCAGAGagUACCCACUGAAUCc -3'
miRNA:   3'- -CCU--UCGGUUUUagGUGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 79112 0.74 0.884069
Target:  5'- -uAAGCCAGAagaccAUCCACaCCACCcagaaggAGACCa -3'
miRNA:   3'- ccUUCGGUUU-----UAGGUG-GGUGG-------UUUGG- -5'
9447 5' -48.3 NC_002531.1 + 53567 0.73 0.905692
Target:  5'- --uAGCCAAGAg-CAUCCGCCAAGCa -3'
miRNA:   3'- ccuUCGGUUUUagGUGGGUGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 42541 0.73 0.914633
Target:  5'- -aAGGCCAugcaGAAauacuuucucauguuUCCACCCGCCGAcCCa -3'
miRNA:   3'- ccUUCGGU----UUU---------------AGGUGGGUGGUUuGG- -5'
9447 5' -48.3 NC_002531.1 + 118201 0.73 0.918304
Target:  5'- aGGGAGCagaGGGAUCUgaaggagaagGCCCAUgCAGACCa -3'
miRNA:   3'- -CCUUCGg--UUUUAGG----------UGGGUG-GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 56674 0.73 0.918304
Target:  5'- --cAGCCGuGAga-ACCCACCAGGCCu -3'
miRNA:   3'- ccuUCGGUuUUaggUGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 100655 0.73 0.918304
Target:  5'- uGGAAGCCAuguGUCaccucaacuaugCACCUACUcAACCa -3'
miRNA:   3'- -CCUUCGGUuu-UAG------------GUGGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 122990 0.73 0.924209
Target:  5'- aGGAgcucaaGGCCAugcUCCgcGCCUGCCGGGCCu -3'
miRNA:   3'- -CCU------UCGGUuuuAGG--UGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 55159 0.73 0.929844
Target:  5'- aGGAGCCAcc-UCCGCUCuCUAGACCc -3'
miRNA:   3'- cCUUCGGUuuuAGGUGGGuGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 123174 0.72 0.938808
Target:  5'- uGGaAAGUCAAAGcgacCCACCCcgggcuguugcaccACCAGGCCa -3'
miRNA:   3'- -CC-UUCGGUUUUa---GGUGGG--------------UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 129556 0.71 0.965424
Target:  5'- cGGGccugcAGCCAAGA---ACCCACCAaaaGACCc -3'
miRNA:   3'- -CCU-----UCGGUUUUaggUGGGUGGU---UUGG- -5'
9447 5' -48.3 NC_002531.1 + 61767 0.71 0.965424
Target:  5'- cGGAGCU--GGUCCACUgGCUAGACa -3'
miRNA:   3'- cCUUCGGuuUUAGGUGGgUGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 129478 0.71 0.968738
Target:  5'- aGGuccuuGGgCGGGGUCUugCCugCAGGCCc -3'
miRNA:   3'- -CCu----UCgGUUUUAGGugGGugGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 130002 0.71 0.971222
Target:  5'- aGGAGGCCuAGGUCCuuacgugcuaccUCCACCuuuACCu -3'
miRNA:   3'- -CCUUCGGuUUUAGGu-----------GGGUGGuu-UGG- -5'
9447 5' -48.3 NC_002531.1 + 82285 0.7 0.977317
Target:  5'- aGGAAGCCAcaAAuuuUCCucugcCCCACguAACUg -3'
miRNA:   3'- -CCUUCGGU--UUu--AGGu----GGGUGguUUGG- -5'
9447 5' -48.3 NC_002531.1 + 98291 0.7 0.977317
Target:  5'- -uAGGCCAGcAUCaCAUCCACaGAACCu -3'
miRNA:   3'- ccUUCGGUUuUAG-GUGGGUGgUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.