miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9450 5' -50.5 NC_002531.1 + 115869 1.09 0.006279
Target:  5'- uUUAAUUUAUGUAGGUGGGGGCUGGCCc -3'
miRNA:   3'- -AAUUAAAUACAUCCACCCCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 101054 0.75 0.692376
Target:  5'- -gAGUUUAUG-AGGUGGGuGGCgaugguuccaaaaugGGCCu -3'
miRNA:   3'- aaUUAAAUACaUCCACCC-CCGa--------------CCGG- -5'
9450 5' -50.5 NC_002531.1 + 5080 0.69 0.921514
Target:  5'- -------cUGUA--UGGGGGCUGGCUu -3'
miRNA:   3'- aauuaaauACAUccACCCCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 103406 0.69 0.926745
Target:  5'- -gGGUUUG-GUGGGUGGauuuuggcuuccuGGGCUggaGGCCu -3'
miRNA:   3'- aaUUAAAUaCAUCCACC-------------CCCGA---CCGG- -5'
9450 5' -50.5 NC_002531.1 + 14307 0.69 0.937577
Target:  5'- -gGGUggUGUGUGaGUuaguuaaaagccuGGGGGCUGGCUg -3'
miRNA:   3'- aaUUAa-AUACAUcCA-------------CCCCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 78984 0.68 0.960349
Target:  5'- -aGAUUUuucaGUGUuaguugGGGUGGGGGUugUGGUg -3'
miRNA:   3'- aaUUAAA----UACA------UCCACCCCCG--ACCGg -5'
9450 5' -50.5 NC_002531.1 + 130429 0.67 0.973615
Target:  5'- --------aGUGGGUGGGuGUUGGaCCa -3'
miRNA:   3'- aauuaaauaCAUCCACCCcCGACC-GG- -5'
9450 5' -50.5 NC_002531.1 + 115649 0.66 0.981198
Target:  5'- ---------cUAGGUGGcccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC---------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114520 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114607 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114636 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114693 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114491 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114462 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114433 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114404 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114375 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114288 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114259 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5'
9450 5' -50.5 NC_002531.1 + 114230 0.66 0.983322
Target:  5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3'
miRNA:   3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.