Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9450 | 5' | -50.5 | NC_002531.1 | + | 5080 | 0.69 | 0.921514 |
Target: 5'- -------cUGUA--UGGGGGCUGGCUu -3' miRNA: 3'- aauuaaauACAUccACCCCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 14307 | 0.69 | 0.937577 |
Target: 5'- -gGGUggUGUGUGaGUuaguuaaaagccuGGGGGCUGGCUg -3' miRNA: 3'- aaUUAa-AUACAUcCA-------------CCCCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 78984 | 0.68 | 0.960349 |
Target: 5'- -aGAUUUuucaGUGUuaguugGGGUGGGGGUugUGGUg -3' miRNA: 3'- aaUUAAA----UACA------UCCACCCCCG--ACCGg -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 101054 | 0.75 | 0.692376 |
Target: 5'- -gAGUUUAUG-AGGUGGGuGGCgaugguuccaaaaugGGCCu -3' miRNA: 3'- aaUUAAAUACaUCCACCC-CCGa--------------CCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 103406 | 0.69 | 0.926745 |
Target: 5'- -gGGUUUG-GUGGGUGGauuuuggcuuccuGGGCUggaGGCCu -3' miRNA: 3'- aaUUAAAUaCAUCCACC-------------CCCGA---CCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114172 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114201 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114230 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114259 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114288 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114317 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114346 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114375 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114404 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114433 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114462 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114491 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114520 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114549 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114578 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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