Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9452 | 5' | -56.2 | NC_002531.1 | + | 118923 | 0.67 | 0.771688 |
Target: 5'- --aAGGAGAaGGCCC-CgagGGACCAGa -3' miRNA: 3'- uucUCUUCUcCCGGGuGaa-CCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118956 | 0.67 | 0.781244 |
Target: 5'- --aAGGAGAaGGCCCugagGGACCAGa -3' miRNA: 3'- uucUCUUCUcCCGGGugaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119020 | 0.72 | 0.525123 |
Target: 5'- ----cAAGAGGGCCCugagGGACCAGa -3' miRNA: 3'- uucucUUCUCCCGGGugaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119069 | 0.73 | 0.460368 |
Target: 5'- uGAGGGAccAGAGGggccugaaggagauaGCCCAgaUGGGCCAGg -3' miRNA: 3'- -UUCUCU--UCUCC---------------CGGGUgaACCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119148 | 0.67 | 0.781244 |
Target: 5'- --aAGGAGAaGGCCCugagGGACCAGa -3' miRNA: 3'- uucUCUUCUcCCGGGugaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119181 | 0.67 | 0.781244 |
Target: 5'- --aAGGAGAaGGCCCugagGGACCAGa -3' miRNA: 3'- uucUCUUCUcCCGGGugaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119247 | 0.68 | 0.752195 |
Target: 5'- --aAGA--GGGGCCCGag-GGACCAGg -3' miRNA: 3'- uucUCUucUCCCGGGUgaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119297 | 0.73 | 0.469918 |
Target: 5'- cGAGGGAccAGAGGggccugaaggagauaGCCCAgaUGGGCCAGa -3' miRNA: 3'- -UUCUCU--UCUCC---------------CGGGUgaACCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119442 | 0.68 | 0.752195 |
Target: 5'- cAGGuGcucAAGAgGGGCCCGag-GGACCAGg -3' miRNA: 3'- -UUCuC---UUCU-CCCGGGUgaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119496 | 0.67 | 0.781244 |
Target: 5'- --aAGGAGAaGGCCCugagGGACCAGa -3' miRNA: 3'- uucUCUUCUcCCGGGugaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119532 | 0.81 | 0.143609 |
Target: 5'- aAGGAGAcGAGGGCCC-CgagGGACCAGa -3' miRNA: 3'- -UUCUCUuCUCCCGGGuGaa-CCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119563 | 0.67 | 0.762002 |
Target: 5'- ----cAAGAGGGCCCugagGGACUAGa -3' miRNA: 3'- uucucUUCUCCCGGGugaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119612 | 0.68 | 0.736276 |
Target: 5'- cGAGGGAccagaagggccugaaGGAGauaGCCCAgaUGGGCCAGg -3' miRNA: 3'- -UUCUCU---------------UCUCc--CGGGUgaACCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 119711 | 1.07 | 0.002692 |
Target: 5'- aAAGAGAAGAGGGCCCACUUGGACCAGa -3' miRNA: 3'- -UUCUCUUCUCCCGGGUGAACCUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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