miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9464 5' -52.7 NC_002531.1 + 18156 0.66 0.96369
Target:  5'- uGGAAGAgcuaucccgcgcguGGUGCCGUgaGCAGCAccgAGCc -3'
miRNA:   3'- -CUUUCU--------------UCGCGGCG--CGUCGUcuaUCG- -5'
9464 5' -52.7 NC_002531.1 + 37784 0.66 0.960809
Target:  5'- -cAAGAgucccGGCGCaGCGCAGCccuguacAGAaAGCa -3'
miRNA:   3'- cuUUCU-----UCGCGgCGCGUCG-------UCUaUCG- -5'
9464 5' -52.7 NC_002531.1 + 97384 0.66 0.952926
Target:  5'- aAGAGAGGUGCCGUGUAGaguuuGAaaacauuUAGUa -3'
miRNA:   3'- cUUUCUUCGCGGCGCGUCgu---CU-------AUCG- -5'
9464 5' -52.7 NC_002531.1 + 124599 0.66 0.949054
Target:  5'- ---cGAcGUGCCuuucGCcCAGCAGGUGGCu -3'
miRNA:   3'- cuuuCUuCGCGG----CGcGUCGUCUAUCG- -5'
9464 5' -52.7 NC_002531.1 + 32487 0.66 0.944509
Target:  5'- -cAGGGAGUGuuGCuCAGCAGcucacUAGCu -3'
miRNA:   3'- cuUUCUUCGCggCGcGUCGUCu----AUCG- -5'
9464 5' -52.7 NC_002531.1 + 284 0.66 0.944509
Target:  5'- gGAGAGggGCuaucuGCUGCGCGGCGc----- -3'
miRNA:   3'- -CUUUCuuCG-----CGGCGCGUCGUcuaucg -5'
9464 5' -52.7 NC_002531.1 + 45388 0.66 0.944509
Target:  5'- aGAAGuAGGCGaCGCGCGGCGc--GGCa -3'
miRNA:   3'- cUUUC-UUCGCgGCGCGUCGUcuaUCG- -5'
9464 5' -52.7 NC_002531.1 + 12624 0.67 0.929324
Target:  5'- gGGGAGAAgGCgGCCGCGUAGgcUAGGU-GCu -3'
miRNA:   3'- -CUUUCUU-CG-CGGCGCGUC--GUCUAuCG- -5'
9464 5' -52.7 NC_002531.1 + 74614 0.67 0.92374
Target:  5'- cAGAGcGGUGCUGCuGCGGCuGGUcGCa -3'
miRNA:   3'- cUUUCuUCGCGGCG-CGUCGuCUAuCG- -5'
9464 5' -52.7 NC_002531.1 + 93918 0.67 0.917893
Target:  5'- -----uGGCaGCgGCGgAGCAGAUGGUg -3'
miRNA:   3'- cuuucuUCG-CGgCGCgUCGUCUAUCG- -5'
9464 5' -52.7 NC_002531.1 + 236 0.68 0.911786
Target:  5'- -uGAGGAGCcUCGCaCGGCAGAgAGCc -3'
miRNA:   3'- cuUUCUUCGcGGCGcGUCGUCUaUCG- -5'
9464 5' -52.7 NC_002531.1 + 93646 0.68 0.891919
Target:  5'- uGGAAGcAAGUaCCGC-CAGCAGAgGGCc -3'
miRNA:   3'- -CUUUC-UUCGcGGCGcGUCGUCUaUCG- -5'
9464 5' -52.7 NC_002531.1 + 81928 0.69 0.87742
Target:  5'- cAGAGggGCGCUGCGCuG-AGGUGu- -3'
miRNA:   3'- cUUUCuuCGCGGCGCGuCgUCUAUcg -5'
9464 5' -52.7 NC_002531.1 + 106049 0.69 0.87742
Target:  5'- uGGAGAAGUuUCaCGguGCAGAUGGCc -3'
miRNA:   3'- cUUUCUUCGcGGcGCguCGUCUAUCG- -5'
9464 5' -52.7 NC_002531.1 + 125774 0.69 0.85389
Target:  5'- cGGAAGAGGgGCCucgaGUGCAGUGGGcAGUu -3'
miRNA:   3'- -CUUUCUUCgCGG----CGCGUCGUCUaUCG- -5'
9464 5' -52.7 NC_002531.1 + 32311 0.69 0.845598
Target:  5'- -uGAGuGGCGCU-CGCAGCAGcUAGUg -3'
miRNA:   3'- cuUUCuUCGCGGcGCGUCGUCuAUCG- -5'
9464 5' -52.7 NC_002531.1 + 68079 0.7 0.810388
Target:  5'- uGGAGGAcagGGCGCUGUGCAGUgagcccAGGUAcuGCu -3'
miRNA:   3'- -CUUUCU---UCGCGGCGCGUCG------UCUAU--CG- -5'
9464 5' -52.7 NC_002531.1 + 35218 0.74 0.626348
Target:  5'- gGAAuAGAAGUGCUGaGgGGUAGAUAGCg -3'
miRNA:   3'- -CUU-UCUUCGCGGCgCgUCGUCUAUCG- -5'
9464 5' -52.7 NC_002531.1 + 90238 0.74 0.604946
Target:  5'- uGGAcGAAcGCGCCGCGCGGCuGGAUGu- -3'
miRNA:   3'- -CUUuCUU-CGCGGCGCGUCG-UCUAUcg -5'
9464 5' -52.7 NC_002531.1 + 46305 0.77 0.432262
Target:  5'- aGGAGggGCGUgGCGCAGCuugacGGAgAGCa -3'
miRNA:   3'- cUUUCuuCGCGgCGCGUCG-----UCUaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.