miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9492 3' -56.9 NC_002531.1 + 97143 0.66 0.803105
Target:  5'- cAUCCCAuacaUCUACCAGGCUuuguucgcUACCAa-- -3'
miRNA:   3'- cUGGGGU----AGAUGGUCCGG--------AUGGUcuu -5'
9492 3' -56.9 NC_002531.1 + 12268 0.67 0.725784
Target:  5'- aACUCCAUCUauuacgugaACCGGGUCgcgcGCCAGGc -3'
miRNA:   3'- cUGGGGUAGA---------UGGUCCGGa---UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 103616 0.68 0.695121
Target:  5'- aGCCCCAgc-ACCAGaGCCagcACCAGAAc -3'
miRNA:   3'- cUGGGGUagaUGGUC-CGGa--UGGUCUU- -5'
9492 3' -56.9 NC_002531.1 + 64521 0.68 0.694089
Target:  5'- uACCCCAgucuguggcaaucUCUGCCAGGuguCCUACauaGGAGg -3'
miRNA:   3'- cUGGGGU-------------AGAUGGUCC---GGAUGg--UCUU- -5'
9492 3' -56.9 NC_002531.1 + 10337 0.68 0.668134
Target:  5'- cGGCCCCGUCUgguugugcugccacuGCCAGGUgUugaaaGCUAGAc -3'
miRNA:   3'- -CUGGGGUAGA---------------UGGUCCGgA-----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114688 0.69 0.632554
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGn -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 46275 0.69 0.622073
Target:  5'- cACCgUGUCUAUCAGGCCgcguuCCAGGg -3'
miRNA:   3'- cUGGgGUAGAUGGUCCGGau---GGUCUu -5'
9492 3' -56.9 NC_002531.1 + 50620 0.7 0.590711
Target:  5'- aGCCCCAggUugCAGGUCUcuaccuacacACCAGAAa -3'
miRNA:   3'- cUGGGGUagAugGUCCGGA----------UGGUCUU- -5'
9492 3' -56.9 NC_002531.1 + 114370 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114399 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114428 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114457 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114486 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114341 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114312 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114283 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114254 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114225 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114196 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5'
9492 3' -56.9 NC_002531.1 + 114167 0.7 0.569948
Target:  5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3'
miRNA:   3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.