Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 73574 | 0.66 | 0.763861 |
Target: 5'- uUGUGGGagAAUgaGGCCAuugcagGGGGCUa -3' miRNA: 3'- -ACACCCggUUGggCCGGUua----CCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 119577 | 0.66 | 0.753482 |
Target: 5'- -aUGGGCCAggugcucaagaggGCCCugagGGaCUAGaGGGGCCu -3' miRNA: 3'- acACCCGGU-------------UGGG----CC-GGUUaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 99459 | 0.66 | 0.743937 |
Target: 5'- --aGGGCCAcuugaacGCCUGGCCGuagGUGGuaaguGACa -3' miRNA: 3'- acaCCCGGU-------UGGGCCGGU---UACC-----CUGg -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 53766 | 0.66 | 0.725545 |
Target: 5'- gUGUGGGCCAgguccauagACCaucGCCAcaccGUGGGuACa -3' miRNA: 3'- -ACACCCGGU---------UGGgc-CGGU----UACCC-UGg -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 119548 | 0.66 | 0.715747 |
Target: 5'- --aGGGCC-AUCUGGuCCaAGUGGGcCCu -3' miRNA: 3'- acaCCCGGuUGGGCC-GG-UUACCCuGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114524 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114466 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114582 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114292 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114234 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114176 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114118 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114060 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114002 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 54152 | 0.67 | 0.705879 |
Target: 5'- --aGGGCCuuggagcgcucGCCCaGCUugcGUGGGGCCc -3' miRNA: 3'- acaCCCGGu----------UGGGcCGGu--UACCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 115103 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114987 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114871 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114813 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
|||||||
9500 | 3' | -59.2 | NC_002531.1 | + | 114640 | 0.67 | 0.705879 |
Target: 5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3' miRNA: 3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home