miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9587 5' -58.4 NC_002577.1 + 130560 1.05 0.003239
Target:  5'- uCGGCCGAGGGUAGGCGCAGAGGAAAUc -3'
miRNA:   3'- -GCCGGCUCCCAUCCGCGUCUCCUUUA- -5'
9587 5' -58.4 NC_002577.1 + 3054 1.05 0.003239
Target:  5'- uCGGCCGAGGGUAGGCGCAGAGGAAAUc -3'
miRNA:   3'- -GCCGGCUCCCAUCCGCGUCUCCUUUA- -5'
9587 5' -58.4 NC_002577.1 + 135372 0.8 0.164386
Target:  5'- aGGUCGGGGGgGGGgGCGGGGGGAGUc -3'
miRNA:   3'- gCCGGCUCCCaUCCgCGUCUCCUUUA- -5'
9587 5' -58.4 NC_002577.1 + 138501 0.75 0.328734
Target:  5'- aGGCCGGGGG-AGGCcgggGUAGGGGAu-- -3'
miRNA:   3'- gCCGGCUCCCaUCCG----CGUCUCCUuua -5'
9587 5' -58.4 NC_002577.1 + 158837 0.75 0.328734
Target:  5'- aGGCCGGGGG-AGGCcgggGUAGGGGAu-- -3'
miRNA:   3'- gCCGGCUCCCaUCCG----CGUCUCCUuua -5'
9587 5' -58.4 NC_002577.1 + 2899 0.75 0.343689
Target:  5'- -cGCCGAGGGUAGGCGUcGAGaAAAUc -3'
miRNA:   3'- gcCGGCUCCCAUCCGCGuCUCcUUUA- -5'
9587 5' -58.4 NC_002577.1 + 130715 0.75 0.343689
Target:  5'- -cGCCGAGGGUAGGCGUcGAGaAAAUc -3'
miRNA:   3'- gcCGGCUCCCAUCCGCGuCUCcUUUA- -5'
9587 5' -58.4 NC_002577.1 + 156716 0.7 0.557193
Target:  5'- gGGCUaAGGGgagguGGUGUAGGGGGAGUg -3'
miRNA:   3'- gCCGGcUCCCau---CCGCGUCUCCUUUA- -5'
9587 5' -58.4 NC_002577.1 + 140622 0.7 0.557193
Target:  5'- gGGCUaAGGGgagguGGUGUAGGGGGAGUg -3'
miRNA:   3'- gCCGGcUCCCau---CCGCGUCUCCUUUA- -5'
9587 5' -58.4 NC_002577.1 + 81265 0.7 0.567134
Target:  5'- uGGCCGcGGGcguGGCGCAGcacGGGGAc- -3'
miRNA:   3'- gCCGGCuCCCau-CCGCGUC---UCCUUua -5'
9587 5' -58.4 NC_002577.1 + 140494 0.7 0.57712
Target:  5'- aCGGCaGAGGcGUGGGgGgAGGGGAAc- -3'
miRNA:   3'- -GCCGgCUCC-CAUCCgCgUCUCCUUua -5'
9587 5' -58.4 NC_002577.1 + 156844 0.7 0.57712
Target:  5'- aCGGCaGAGGcGUGGGgGgAGGGGAAc- -3'
miRNA:   3'- -GCCGgCUCC-CAUCCgCgUCUCCUUua -5'
9587 5' -58.4 NC_002577.1 + 156746 0.7 0.60728
Target:  5'- gGGCUaaGGGGGgguGGCGUAGgAGGAGGg -3'
miRNA:   3'- gCCGG--CUCCCau-CCGCGUC-UCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 140592 0.7 0.60728
Target:  5'- gGGCUaaGGGGGgguGGCGUAGgAGGAGGg -3'
miRNA:   3'- gCCGG--CUCCCau-CCGCGUC-UCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 131027 0.69 0.641647
Target:  5'- gGGCCuuuAGGGUgaugguugggcccuuAGGgGCAGGGGAGGc -3'
miRNA:   3'- gCCGGc--UCCCA---------------UCCgCGUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 2587 0.69 0.641647
Target:  5'- gGGCCuuuAGGGUgaugguugggcccuuAGGgGCAGGGGAGGc -3'
miRNA:   3'- gCCGGc--UCCCA---------------UCCgCGUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 9509 0.69 0.657809
Target:  5'- gGGCuUGGGGGgggGGGgGgGGAGGGAGg -3'
miRNA:   3'- gCCG-GCUCCCa--UCCgCgUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 124105 0.69 0.657809
Target:  5'- gGGCuUGGGGGgggGGGgGgGGAGGGAGg -3'
miRNA:   3'- gCCG-GCUCCCa--UCCgCgUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 16499 0.67 0.737154
Target:  5'- gGGCgGGGGGguuGGCcgGGAGGAAGa -3'
miRNA:   3'- gCCGgCUCCCau-CCGcgUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 156776 0.67 0.746764
Target:  5'- gGGCUaAGGGgagguGGCGUAGgAGGAGGg -3'
miRNA:   3'- gCCGGcUCCCau---CCGCGUC-UCCUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.