Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 1614 | 0.66 | 0.818517 |
Target: 5'- aGGCCcuaacccuacucgGGGGGgggGGGgGgGGAGGggGg -3' miRNA: 3'- gCCGG-------------CUCCCa--UCCgCgUCUCCuuUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 1782 | 0.66 | 0.819368 |
Target: 5'- gGGCCuggcagggguAGGGUAGGCGCGaAGGuuGg -3' miRNA: 3'- gCCGGc---------UCCCAUCCGCGUcUCCuuUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 1900 | 0.67 | 0.765679 |
Target: 5'- gGGCCcguaAGGGUAGGgGCuGGGGu--- -3' miRNA: 3'- gCCGGc---UCCCAUCCgCGuCUCCuuua -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 2587 | 0.69 | 0.641647 |
Target: 5'- gGGCCuuuAGGGUgaugguugggcccuuAGGgGCAGGGGAGGc -3' miRNA: 3'- gCCGGc--UCCCA---------------UCCgCGUCUCCUUUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 2899 | 0.75 | 0.343689 |
Target: 5'- -cGCCGAGGGUAGGCGUcGAGaAAAUc -3' miRNA: 3'- gcCGGCUCCCAUCCGCGuCUCcUUUA- -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 3054 | 1.05 | 0.003239 |
Target: 5'- uCGGCCGAGGGUAGGCGCAGAGGAAAUc -3' miRNA: 3'- -GCCGGCUCCCAUCCGCGUCUCCUUUA- -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 9509 | 0.69 | 0.657809 |
Target: 5'- gGGCuUGGGGGgggGGGgGgGGAGGGAGg -3' miRNA: 3'- gCCG-GCUCCCa--UCCgCgUCUCCUUUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 10520 | 0.66 | 0.802049 |
Target: 5'- -cGCCGcGGGUgcgGGGC-CGGGGGGAAa -3' miRNA: 3'- gcCGGCuCCCA---UCCGcGUCUCCUUUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 16499 | 0.67 | 0.737154 |
Target: 5'- gGGCgGGGGGguuGGCcgGGAGGAAGa -3' miRNA: 3'- gCCGgCUCCCau-CCGcgUCUCCUUUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 81265 | 0.7 | 0.567134 |
Target: 5'- uGGCCGcGGGcguGGCGCAGcacGGGGAc- -3' miRNA: 3'- gCCGGCuCCCau-CCGCGUC---UCCUUua -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 123094 | 0.66 | 0.802049 |
Target: 5'- -cGCCGcGGGUgcgGGGC-CGGGGGGAAa -3' miRNA: 3'- gcCGGCuCCCA---UCCGcGUCUCCUUUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 124105 | 0.69 | 0.657809 |
Target: 5'- gGGCuUGGGGGgggGGGgGgGGAGGGAGg -3' miRNA: 3'- gCCG-GCUCCCa--UCCgCgUCUCCUUUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 128992 | 0.67 | 0.756275 |
Target: 5'- uGGCCGcGGGUAcGCGCGccgaguauGGGGggGc -3' miRNA: 3'- gCCGGCuCCCAUcCGCGU--------CUCCuuUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 130560 | 1.05 | 0.003239 |
Target: 5'- uCGGCCGAGGGUAGGCGCAGAGGAAAUc -3' miRNA: 3'- -GCCGGCUCCCAUCCGCGUCUCCUUUA- -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 130715 | 0.75 | 0.343689 |
Target: 5'- -cGCCGAGGGUAGGCGUcGAGaAAAUc -3' miRNA: 3'- gcCGGCUCCCAUCCGCGuCUCcUUUA- -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 131027 | 0.69 | 0.641647 |
Target: 5'- gGGCCuuuAGGGUgaugguugggcccuuAGGgGCAGGGGAGGc -3' miRNA: 3'- gCCGGc--UCCCA---------------UCCgCGUCUCCUUUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 131831 | 0.66 | 0.819368 |
Target: 5'- gGGCCuggcagggguAGGGUAGGCGCGaAGGuuGg -3' miRNA: 3'- gCCGGc---------UCCCAUCCGCGUcUCCuuUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 132000 | 0.66 | 0.818517 |
Target: 5'- aGGCCcuaacccuacucgGGGGGgggGGGgGgGGAGGggGg -3' miRNA: 3'- gCCGG-------------CUCCCa--UCCgCgUCUCCuuUa -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 135372 | 0.8 | 0.164386 |
Target: 5'- aGGUCGGGGGgGGGgGCGGGGGGAGUc -3' miRNA: 3'- gCCGGCUCCCaUCCgCGUCUCCUUUA- -5' |
|||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 135660 | 0.66 | 0.827781 |
Target: 5'- gGGCCGAGG--AGGCuGCgaGGuAGGAGAg -3' miRNA: 3'- gCCGGCUCCcaUCCG-CG--UC-UCCUUUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home