miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 3' -53 NC_002577.1 + 160171 0.68 0.952223
Target:  5'- cGCCgaCGcgGCcUCuUCCGGAACGUCc -3'
miRNA:   3'- -CGGgaGCuuUGcAGuAGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 41001 0.68 0.959834
Target:  5'- gGCCCU---GACGggagaGUCCGcGGAUGCCa -3'
miRNA:   3'- -CGGGAgcuUUGCag---UAGGC-CUUGCGG- -5'
9588 3' -53 NC_002577.1 + 158396 0.68 0.955759
Target:  5'- aGCCg-UGggGCGUCccgccggguUCCGGAuuuccguuccgcaGCGCCa -3'
miRNA:   3'- -CGGgaGCuuUGCAGu--------AGGCCU-------------UGCGG- -5'
9588 3' -53 NC_002577.1 + 105154 0.68 0.959834
Target:  5'- cGCuCUUCGGAuCGuUCAggCCGGGAUGCg -3'
miRNA:   3'- -CG-GGAGCUUuGC-AGUa-GGCCUUGCGg -5'
9588 3' -53 NC_002577.1 + 137167 0.68 0.952223
Target:  5'- cGCCgaCGcgGCcUCuUCCGGAACGUCc -3'
miRNA:   3'- -CGGgaGCuuUGcAGuAGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 160521 0.68 0.952223
Target:  5'- gGUUCUCGAcGGCGUUGUCC---GCGCCg -3'
miRNA:   3'- -CGGGAGCU-UUGCAGUAGGccuUGCGG- -5'
9588 3' -53 NC_002577.1 + 138585 0.68 0.963307
Target:  5'- cGCCCucuucaUCGGAACaGUCGUCUGc--CGCCc -3'
miRNA:   3'- -CGGG------AGCUUUG-CAGUAGGCcuuGCGG- -5'
9588 3' -53 NC_002577.1 + 75861 0.68 0.952223
Target:  5'- cGCgCUCGAuuCGUCcgugCUGGAGCGaUCg -3'
miRNA:   3'- -CGgGAGCUuuGCAGua--GGCCUUGC-GG- -5'
9588 3' -53 NC_002577.1 + 158752 0.68 0.963307
Target:  5'- cGCCCucuucaUCGGAACaGUCGUCUGc--CGCCc -3'
miRNA:   3'- -CGGG------AGCUUUG-CAGUAGGCcuuGCGG- -5'
9588 3' -53 NC_002577.1 + 90141 0.69 0.929155
Target:  5'- uCCCUCGAAGCGaauagaaAUuuGGAcacCGCCu -3'
miRNA:   3'- cGGGAGCUUUGCag-----UAggCCUu--GCGG- -5'
9588 3' -53 NC_002577.1 + 71895 0.69 0.923832
Target:  5'- cGCCCUacaGAucuGCGUCGUaugaaaaugcaaCCGGucAUGCCg -3'
miRNA:   3'- -CGGGAg--CUu--UGCAGUA------------GGCCu-UGCGG- -5'
9588 3' -53 NC_002577.1 + 12037 0.69 0.943699
Target:  5'- cGCCCggGu--CGUCGcCCGGGucgGCGCCc -3'
miRNA:   3'- -CGGGagCuuuGCAGUaGGCCU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 33539 0.69 0.934239
Target:  5'- uGCCC--GAAGCGUagucUUCGGAACGCg -3'
miRNA:   3'- -CGGGagCUUUGCAgu--AGGCCUUGCGg -5'
9588 3' -53 NC_002577.1 + 39623 0.69 0.932739
Target:  5'- gGCCggCGGAgaauauacacgccaGCGUaguGUCCGGAuuGCGCCa -3'
miRNA:   3'- -CGGgaGCUU--------------UGCAg--UAGGCCU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 52373 0.69 0.939087
Target:  5'- cCCCUCcguAugGUCGcugcuagacaUCCGGAGacCGCCg -3'
miRNA:   3'- cGGGAGcu-UugCAGU----------AGGCCUU--GCGG- -5'
9588 3' -53 NC_002577.1 + 20613 0.69 0.939087
Target:  5'- uUUgUCGAAACGguagacgaUCAggaacUCCGGAugGCCg -3'
miRNA:   3'- cGGgAGCUUUGC--------AGU-----AGGCCUugCGG- -5'
9588 3' -53 NC_002577.1 + 121649 0.69 0.943699
Target:  5'- cGCCCggGu--CGUCGcCCGGGuccGCGCCc -3'
miRNA:   3'- -CGGGagCuuuGCAGUaGGCCU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 122730 0.7 0.900175
Target:  5'- cGCCUUCGGGccgcgacccucGCGg-GUCCGGAAcCGUCg -3'
miRNA:   3'- -CGGGAGCUU-----------UGCagUAGGCCUU-GCGG- -5'
9588 3' -53 NC_002577.1 + 160345 0.7 0.886268
Target:  5'- cGCCgUCGAGaacccGCGUCcgcguuugggaagGUcCCGGAcagGCGCCg -3'
miRNA:   3'- -CGGgAGCUU-----UGCAG-------------UA-GGCCU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 136993 0.7 0.886268
Target:  5'- cGCCgUCGAGaacccGCGUCcgcguuugggaagGUcCCGGAcagGCGCCg -3'
miRNA:   3'- -CGGgAGCUU-----UGCAG-------------UA-GGCCU---UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.