Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9588 | 5' | -57.2 | NC_002577.1 | + | 3343 | 1.1 | 0.001952 |
Target: 5'- gAAGCCGCCCCGGUAAAGUCCAGACGCg -3' miRNA: 3'- -UUCGGCGGGGCCAUUUCAGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 130271 | 1.1 | 0.001952 |
Target: 5'- gAAGCCGCCCCGGUAAAGUCCAGACGCg -3' miRNA: 3'- -UUCGGCGGGGCCAUUUCAGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 125446 | 0.76 | 0.347699 |
Target: 5'- aAGGCCGUacggacaCCGGUGc-GUCCGGGCGCu -3' miRNA: 3'- -UUCGGCGg------GGCCAUuuCAGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 8167 | 0.76 | 0.347699 |
Target: 5'- aAGGCCGUacggacaCCGGUGc-GUCCGGGCGCu -3' miRNA: 3'- -UUCGGCGg------GGCCAUuuCAGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 159855 | 0.76 | 0.35546 |
Target: 5'- --aCCGuCCCCGGcagGGAuGUCCGGACGCg -3' miRNA: 3'- uucGGC-GGGGCCa--UUU-CAGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 137483 | 0.76 | 0.35546 |
Target: 5'- --aCCGuCCCCGGcagGGAuGUCCGGACGCg -3' miRNA: 3'- uucGGC-GGGGCCa--UUU-CAGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 40259 | 0.75 | 0.371344 |
Target: 5'- -cGCUGCCgauuCCGGUAAGuGUUCAGAUGCg -3' miRNA: 3'- uuCGGCGG----GGCCAUUU-CAGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 136313 | 0.73 | 0.476197 |
Target: 5'- -cGCCGCCugggcgggCCGGUGGAGagcggcgCCGGACGUu -3' miRNA: 3'- uuCGGCGG--------GGCCAUUUCa------GGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 161025 | 0.73 | 0.476197 |
Target: 5'- -cGCCGCCugggcgggCCGGUGGAGagcggcgCCGGACGUu -3' miRNA: 3'- uuCGGCGG--------GGCCAUUUCa------GGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 123007 | 0.72 | 0.543702 |
Target: 5'- aAAGCCGUucggcgugagCUCGGgauGAGUCuCGGACGCg -3' miRNA: 3'- -UUCGGCG----------GGGCCau-UUCAG-GUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 143131 | 0.71 | 0.573615 |
Target: 5'- -cGCaCGCCCCGGUcccacaCUAGGCGCa -3' miRNA: 3'- uuCG-GCGGGGCCAuuuca-GGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 125234 | 0.7 | 0.64452 |
Target: 5'- -cGCCGUucgCCCGGccGAGcgcCCGGACGCa -3' miRNA: 3'- uuCGGCG---GGGCCauUUCa--GGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 8380 | 0.7 | 0.64452 |
Target: 5'- -cGCCGUucgCCCGGccGAGcgcCCGGACGCa -3' miRNA: 3'- uuCGGCG---GGGCCauUUCa--GGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 20349 | 0.7 | 0.664805 |
Target: 5'- uAGCCGCCuCCGGgauccgAAAGUCCAcauUGUa -3' miRNA: 3'- uUCGGCGG-GGCCa-----UUUCAGGUcu-GCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 119584 | 0.69 | 0.684987 |
Target: 5'- -uGCCGCCucaaaguuaCCGGggaGAGGUCCGGGacuCGCu -3' miRNA: 3'- uuCGGCGG---------GGCCa--UUUCAGGUCU---GCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 42116 | 0.69 | 0.695018 |
Target: 5'- ---aCGCCCUGGUGGGucUCCAGACGg -3' miRNA: 3'- uucgGCGGGGCCAUUUc-AGGUCUGCg -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 161115 | 0.69 | 0.704996 |
Target: 5'- gGGGUC-CCCCGGggggcGAG-CCGGGCGCc -3' miRNA: 3'- -UUCGGcGGGGCCau---UUCaGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 136223 | 0.69 | 0.704996 |
Target: 5'- gGGGUC-CCCCGGggggcGAG-CCGGGCGCc -3' miRNA: 3'- -UUCGGcGGGGCCau---UUCaGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 105623 | 0.69 | 0.724762 |
Target: 5'- cGGCCGCCguacuuugCCGGU-GAGUUguGACGg -3' miRNA: 3'- uUCGGCGG--------GGCCAuUUCAGguCUGCg -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 158072 | 0.69 | 0.724762 |
Target: 5'- gAAGCCGCCgcggcgCCGGcUGcAGUCgAGACcGCg -3' miRNA: 3'- -UUCGGCGG------GGCC-AUuUCAGgUCUG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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