miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 5' -57.2 NC_002577.1 + 130271 1.1 0.001952
Target:  5'- gAAGCCGCCCCGGUAAAGUCCAGACGCg -3'
miRNA:   3'- -UUCGGCGGGGCCAUUUCAGGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 37368 0.66 0.865648
Target:  5'- cAGCCGCUCCGGUGguuAAGaaauuuugCUAGAguaGCg -3'
miRNA:   3'- uUCGGCGGGGCCAU---UUCa-------GGUCUg--CG- -5'
9588 5' -57.2 NC_002577.1 + 132863 0.66 0.880127
Target:  5'- cAAGuuGCCCgGGUccgcGGGUCUgaAGcACGCa -3'
miRNA:   3'- -UUCggCGGGgCCAu---UUCAGG--UC-UGCG- -5'
9588 5' -57.2 NC_002577.1 + 140283 0.66 0.880127
Target:  5'- cGGUCGCUCCGGaGGGGagCGGGUGCg -3'
miRNA:   3'- uUCGGCGGGGCCaUUUCagGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 123007 0.72 0.543702
Target:  5'- aAAGCCGUucggcgugagCUCGGgauGAGUCuCGGACGCg -3'
miRNA:   3'- -UUCGGCG----------GGGCCau-UUCAG-GUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 125234 0.7 0.64452
Target:  5'- -cGCCGUucgCCCGGccGAGcgcCCGGACGCa -3'
miRNA:   3'- uuCGGCG---GGGCCauUUCa--GGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 136223 0.69 0.704996
Target:  5'- gGGGUC-CCCCGGggggcGAG-CCGGGCGCc -3'
miRNA:   3'- -UUCGGcGGGGCCau---UUCaGGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 139266 0.69 0.724762
Target:  5'- gAAGCCGCCgcggcgCCGGcUGcAGUCgAGACcGCg -3'
miRNA:   3'- -UUCGGCGG------GGCC-AUuUCAGgUCUG-CG- -5'
9588 5' -57.2 NC_002577.1 + 134219 0.67 0.83425
Target:  5'- -uGCCGCCgCCGGcaAGAGUCgguCAGagaGCGCu -3'
miRNA:   3'- uuCGGCGG-GGCCa-UUUCAG---GUC---UGCG- -5'
9588 5' -57.2 NC_002577.1 + 87110 0.66 0.865648
Target:  5'- uAAGUCGCCaUCGGUAAuaAG-CCGGACcacgGCa -3'
miRNA:   3'- -UUCGGCGG-GGCCAUU--UCaGGUCUG----CG- -5'
9588 5' -57.2 NC_002577.1 + 136989 0.66 0.850339
Target:  5'- gAGGCCGCgUCGGc---GUCCgcgagaAGGCGCg -3'
miRNA:   3'- -UUCGGCGgGGCCauuuCAGG------UCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 125312 0.67 0.808778
Target:  5'- -cGCCGCUgCGGc---GUUUAGGCGCg -3'
miRNA:   3'- uuCGGCGGgGCCauuuCAGGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 8167 0.76 0.347699
Target:  5'- aAGGCCGUacggacaCCGGUGc-GUCCGGGCGCu -3'
miRNA:   3'- -UUCGGCGg------GGCCAUuuCAGGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 5124 0.66 0.858094
Target:  5'- -uGuCCGUCCCGGUu--GUCCuAGAaCGUg -3'
miRNA:   3'- uuC-GGCGGGGCCAuuuCAGG-UCU-GCG- -5'
9588 5' -57.2 NC_002577.1 + 137483 0.76 0.35546
Target:  5'- --aCCGuCCCCGGcagGGAuGUCCGGACGCg -3'
miRNA:   3'- uucGGC-GGGGCCa--UUU-CAGGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 21018 0.68 0.744214
Target:  5'- -uGCCGUCCCGGaUAGAGcagCgCAGAgGUa -3'
miRNA:   3'- uuCGGCGGGGCC-AUUUCa--G-GUCUgCG- -5'
9588 5' -57.2 NC_002577.1 + 16590 0.66 0.865648
Target:  5'- gGGGaCCGUCCCGauUAAGGUCaaugccuGGACGCa -3'
miRNA:   3'- -UUC-GGCGGGGCc-AUUUCAGg------UCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 9329 0.66 0.875873
Target:  5'- uAGGCUGgCCCGGggcgcggacgcggucUGAGGgcuugagCCGGugGCu -3'
miRNA:   3'- -UUCGGCgGGGCC---------------AUUUCa------GGUCugCG- -5'
9588 5' -57.2 NC_002577.1 + 161025 0.73 0.476197
Target:  5'- -cGCCGCCugggcgggCCGGUGGAGagcggcgCCGGACGUu -3'
miRNA:   3'- uuCGGCGG--------GGCCAUUUCa------GGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 119584 0.69 0.684987
Target:  5'- -uGCCGCCucaaaguuaCCGGggaGAGGUCCGGGacuCGCu -3'
miRNA:   3'- uuCGGCGG---------GGCCa--UUUCAGGUCU---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.