miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 5' -57.2 NC_002577.1 + 37368 0.66 0.865648
Target:  5'- cAGCCGCUCCGGUGguuAAGaaauuuugCUAGAguaGCg -3'
miRNA:   3'- uUCGGCGGGGCCAU---UUCa-------GGUCUg--CG- -5'
9588 5' -57.2 NC_002577.1 + 128489 0.66 0.858094
Target:  5'- -uGuCCGUCCCGGUu--GUCCuAGAaCGUg -3'
miRNA:   3'- uuC-GGCGGGGCCAuuuCAGG-UCU-GCG- -5'
9588 5' -57.2 NC_002577.1 + 97737 0.66 0.850339
Target:  5'- -cGUCGCCUCGGc---GUCCgugcugggcgggAGACGCg -3'
miRNA:   3'- uuCGGCGGGGCCauuuCAGG------------UCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 157055 0.66 0.880127
Target:  5'- cGGUCGCUCCGGaGGGGagCGGGUGCg -3'
miRNA:   3'- uUCGGCGGGGCCaUUUCagGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 160348 0.66 0.850339
Target:  5'- gAGGCCGCgUCGGc---GUCCgcgagaAGGCGCg -3'
miRNA:   3'- -UUCGGCGgGGCCauuuCAGG------UCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 157418 0.67 0.83425
Target:  5'- cGGCaguucgauaGaCCCCGGUGAGGUCCgcagaGGGCuGCc -3'
miRNA:   3'- uUCGg--------C-GGGGCCAUUUCAGG-----UCUG-CG- -5'
9588 5' -57.2 NC_002577.1 + 163109 0.67 0.83425
Target:  5'- -uGCCGCCgCCGGcaAGAGUCgguCAGagaGCGCu -3'
miRNA:   3'- uuCGGCGG-GGCCa-UUUCAG---GUC---UGCG- -5'
9588 5' -57.2 NC_002577.1 + 8302 0.67 0.808778
Target:  5'- -cGCCGCUgCGGc---GUUUAGGCGCg -3'
miRNA:   3'- uuCGGCGGgGCCauuuCAGGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 55599 0.67 0.808778
Target:  5'- uAGCgCGCCCCGuucGUAuuuUCCGGACGg -3'
miRNA:   3'- uUCG-GCGGGGC---CAUuucAGGUCUGCg -5'
9588 5' -57.2 NC_002577.1 + 45548 0.68 0.790992
Target:  5'- cGGGUCGCCCCGGUGGG---UAGAUGa -3'
miRNA:   3'- -UUCGGCGGGGCCAUUUcagGUCUGCg -5'
9588 5' -57.2 NC_002577.1 + 20349 0.7 0.664805
Target:  5'- uAGCCGCCuCCGGgauccgAAAGUCCAcauUGUa -3'
miRNA:   3'- uUCGGCGG-GGCCa-----UUUCAGGUcu-GCG- -5'
9588 5' -57.2 NC_002577.1 + 8380 0.7 0.64452
Target:  5'- -cGCCGUucgCCCGGccGAGcgcCCGGACGCa -3'
miRNA:   3'- uuCGGCG---GGGCCauUUCa--GGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 143131 0.71 0.573615
Target:  5'- -cGCaCGCCCCGGUcccacaCUAGGCGCa -3'
miRNA:   3'- uuCG-GCGGGGCCAuuuca-GGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 158072 0.69 0.724762
Target:  5'- gAAGCCGCCgcggcgCCGGcUGcAGUCgAGACcGCg -3'
miRNA:   3'- -UUCGGCGG------GGCC-AUuUCAGgUCUG-CG- -5'
9588 5' -57.2 NC_002577.1 + 40259 0.75 0.371344
Target:  5'- -cGCUGCCgauuCCGGUAAGuGUUCAGAUGCg -3'
miRNA:   3'- uuCGGCGG----GGCCAUUU-CAGGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 159855 0.76 0.35546
Target:  5'- --aCCGuCCCCGGcagGGAuGUCCGGACGCg -3'
miRNA:   3'- uucGGC-GGGGCCa--UUU-CAGGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 125446 0.76 0.347699
Target:  5'- aAGGCCGUacggacaCCGGUGc-GUCCGGGCGCu -3'
miRNA:   3'- -UUCGGCGg------GGCCAUuuCAGGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 3343 1.1 0.001952
Target:  5'- gAAGCCGCCCCGGUAAAGUCCAGACGCg -3'
miRNA:   3'- -UUCGGCGGGGCCAUUUCAGGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 136313 0.73 0.476197
Target:  5'- -cGCCGCCugggcgggCCGGUGGAGagcggcgCCGGACGUu -3'
miRNA:   3'- uuCGGCGG--------GGCCAUUUCa------GGUCUGCG- -5'
9588 5' -57.2 NC_002577.1 + 105623 0.69 0.724762
Target:  5'- cGGCCGCCguacuuugCCGGU-GAGUUguGACGg -3'
miRNA:   3'- uUCGGCGG--------GGCCAuUUCAGguCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.