Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9589 | 5' | -56.7 | NC_002577.1 | + | 3180 | 0.84 | 0.144955 |
Target: 5'- uGGAUCcugucaucaAGCACCACGUCGAUGGACGg -3' miRNA: 3'- cCCUAGc--------UCGUGGUGCGGCUACCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 3263 | 0.66 | 0.918048 |
Target: 5'- --cGUCGAGCACCGUGCUGGaGGAa- -3' miRNA: 3'- cccUAGCUCGUGGUGCGGCUaCCUgc -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 3405 | 0.71 | 0.689368 |
Target: 5'- ---cUCGGGCACCGCaCCGAaGGAUGg -3' miRNA: 3'- cccuAGCUCGUGGUGcGGCUaCCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 3664 | 0.68 | 0.851402 |
Target: 5'- uGGGAguuuguuugcUCGAGC-CC-UGCCGgcGGACu -3' miRNA: 3'- -CCCU----------AGCUCGuGGuGCGGCuaCCUGc -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 4626 | 0.75 | 0.456176 |
Target: 5'- aGGGAUggccgCGGGUACgCGCGCCGAguaugggGGGCGc -3' miRNA: 3'- -CCCUA-----GCUCGUG-GUGCGGCUa------CCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 4705 | 1.12 | 0.002082 |
Target: 5'- cGGGAUCGAGCACCACGCCGAUGGACGg -3' miRNA: 3'- -CCCUAGCUCGUGGUGCGGCUACCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 4860 | 0.67 | 0.88061 |
Target: 5'- gGGGAcaCG-GCGCgCGCGCCGAUGcuCGg -3' miRNA: 3'- -CCCUa-GCuCGUG-GUGCGGCUACcuGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 10223 | 0.67 | 0.869314 |
Target: 5'- aGGGAUgGGGaaaaagugaagucCCGCGCUGGcucUGGACGa -3' miRNA: 3'- -CCCUAgCUCgu-----------GGUGCGGCU---ACCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 10629 | 0.67 | 0.873612 |
Target: 5'- aGGGAUCGGGacgauCCGCGgaCGAgaacgaugGGGCGu -3' miRNA: 3'- -CCCUAGCUCgu---GGUGCg-GCUa-------CCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 15873 | 0.67 | 0.89397 |
Target: 5'- uGGuUCGuGUugCugGCCGA-GGGCa -3' miRNA: 3'- cCCuAGCuCGugGugCGGCUaCCUGc -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 26182 | 0.69 | 0.790608 |
Target: 5'- -cGAUaCGAGCGCCuucaguaacgACGCCGuccacaccgugacuGUGGACGg -3' miRNA: 3'- ccCUA-GCUCGUGG----------UGCGGC--------------UACCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 33630 | 0.67 | 0.878532 |
Target: 5'- uGGcuGUUGAccGCAUCGacauugaaguggacCGCCGAUGGACGg -3' miRNA: 3'- cCC--UAGCU--CGUGGU--------------GCGGCUACCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 60775 | 0.67 | 0.873612 |
Target: 5'- cGGAccaCGGucGUACCGacCGCCGGUGGGCa -3' miRNA: 3'- cCCUa--GCU--CGUGGU--GCGGCUACCUGc -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 73761 | 0.66 | 0.911201 |
Target: 5'- cGGaAUCGAGCAUCAagaGCUGGcgacguuuaucgGGACGg -3' miRNA: 3'- cCC-UAGCUCGUGGUg--CGGCUa-----------CCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 83343 | 0.66 | 0.912365 |
Target: 5'- gGGGA-CGAGuCGCUACGagaCGGgcuaUGGACa -3' miRNA: 3'- -CCCUaGCUC-GUGGUGCg--GCU----ACCUGc -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 92723 | 0.66 | 0.922431 |
Target: 5'- aGGGcaccuccgagcuUUGAGUAUUAUGaaCCGAUGGACGg -3' miRNA: 3'- -CCCu-----------AGCUCGUGGUGC--GGCUACCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 103128 | 0.67 | 0.866407 |
Target: 5'- -aGAUCGuGGUGaCGCGCCGuAUGGGCGg -3' miRNA: 3'- ccCUAGC-UCGUgGUGCGGC-UACCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 105658 | 0.67 | 0.887397 |
Target: 5'- -cGAUUaGGCACCguauaaaaugagACGgCGAUGGACGg -3' miRNA: 3'- ccCUAGcUCGUGG------------UGCgGCUACCUGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 105968 | 0.68 | 0.843612 |
Target: 5'- gGGGAgaGAGCgGCCGCGCUGGgaaGGcCGg -3' miRNA: 3'- -CCCUagCUCG-UGGUGCGGCUa--CCuGC- -5' |
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9589 | 5' | -56.7 | NC_002577.1 | + | 107134 | 0.71 | 0.669556 |
Target: 5'- uGGGG-CGGGCGCUACuaaGCaGAUGGAUGg -3' miRNA: 3'- -CCCUaGCUCGUGGUG---CGgCUACCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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