miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9589 5' -56.7 NC_002577.1 + 128908 1.12 0.002082
Target:  5'- cGGGAUCGAGCACCACGCCGAUGGACGg -3'
miRNA:   3'- -CCCUAGCUCGUGGUGCGGCUACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 60775 0.67 0.873612
Target:  5'- cGGAccaCGGucGUACCGacCGCCGGUGGGCa -3'
miRNA:   3'- cCCUa--GCU--CGUGGU--GCGGCUACCUGc -5'
9589 5' -56.7 NC_002577.1 + 123391 0.67 0.869314
Target:  5'- aGGGAUgGGGaaaaagugaagucCCGCGCUGGcucUGGACGa -3'
miRNA:   3'- -CCCUAgCUCgu-----------GGUGCGGCU---ACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 137624 0.67 0.866407
Target:  5'- cGGGAU-GAGC-CCGgcCGCCGuacuuUGGGCa -3'
miRNA:   3'- -CCCUAgCUCGuGGU--GCGGCu----ACCUGc -5'
9589 5' -56.7 NC_002577.1 + 161018 0.68 0.810688
Target:  5'- cGGA--GAGCGCCGCcugggcggGCCGGUGGAg- -3'
miRNA:   3'- cCCUagCUCGUGGUG--------CGGCUACCUgc -5'
9589 5' -56.7 NC_002577.1 + 130209 0.71 0.689368
Target:  5'- ---cUCGGGCACCGCaCCGAaGGAUGg -3'
miRNA:   3'- cccuAGCUCGUGGUGcGGCUaCCUGC- -5'
9589 5' -56.7 NC_002577.1 + 92723 0.66 0.922431
Target:  5'- aGGGcaccuccgagcuUUGAGUAUUAUGaaCCGAUGGACGg -3'
miRNA:   3'- -CCCu-----------AGCUCGUGGUGC--GGCUACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 130351 0.66 0.918048
Target:  5'- --cGUCGAGCACCGUGCUGGaGGAa- -3'
miRNA:   3'- cccUAGCUCGUGGUGCGGCUaCCUgc -5'
9589 5' -56.7 NC_002577.1 + 157796 0.67 0.88335
Target:  5'- cGGcgUGcGCGCCGcCGCCGGgcgcggguacucccuUGGACGa -3'
miRNA:   3'- cCCuaGCuCGUGGU-GCGGCU---------------ACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 134055 0.67 0.873612
Target:  5'- cGGGcggccuagCGAGCGCCcgcGCgGCCGgcGGGCa -3'
miRNA:   3'- -CCCua------GCUCGUGG---UG-CGGCuaCCUGc -5'
9589 5' -56.7 NC_002577.1 + 129949 0.68 0.851402
Target:  5'- uGGGAguuuguuugcUCGAGC-CC-UGCCGgcGGACu -3'
miRNA:   3'- -CCCU----------AGCUCGuGGuGCGGCuaCCUGc -5'
9589 5' -56.7 NC_002577.1 + 130434 0.84 0.144954
Target:  5'- uGGAUCcugucaucaAGCACCACGUCGAUGGACGg -3'
miRNA:   3'- cCCUAGc--------UCGUGGUGCGGCUACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 141154 0.66 0.911785
Target:  5'- cGGGA-CGGGCugCcgaccggGCGUCGggGGcACGg -3'
miRNA:   3'- -CCCUaGCUCGugG-------UGCGGCuaCC-UGC- -5'
9589 5' -56.7 NC_002577.1 + 137942 0.84 0.148634
Target:  5'- -uGAUUGAGCGCUGCGUCGGUGGGCGa -3'
miRNA:   3'- ccCUAGCUCGUGGUGCGGCUACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 10629 0.67 0.873612
Target:  5'- aGGGAUCGGGacgauCCGCGgaCGAgaacgaugGGGCGu -3'
miRNA:   3'- -CCCUAGCUCgu---GGUGCg-GCUa-------CCUGC- -5'
9589 5' -56.7 NC_002577.1 + 140775 0.66 0.912365
Target:  5'- cGG--CGAGCGgCgugcagGCGCCGGUGGGCu -3'
miRNA:   3'- cCCuaGCUCGUgG------UGCGGCUACCUGc -5'
9589 5' -56.7 NC_002577.1 + 128987 0.74 0.492902
Target:  5'- aGGGAUggccgCGGGUACgCGCGCCGAguauggggGGGCGc -3'
miRNA:   3'- -CCCUA-----GCUCGUG-GUGCGGCUa-------CCUGC- -5'
9589 5' -56.7 NC_002577.1 + 4860 0.67 0.88061
Target:  5'- gGGGAcaCG-GCGCgCGCGCCGAUGcuCGg -3'
miRNA:   3'- -CCCUa-GCuCGUG-GUGCGGCUACcuGC- -5'
9589 5' -56.7 NC_002577.1 + 159714 0.67 0.866407
Target:  5'- cGGGAU-GAGC-CCGgcCGCCGuacuuUGGGCa -3'
miRNA:   3'- -CCCUAgCUCGuGGU--GCGGCu----ACCUGc -5'
9589 5' -56.7 NC_002577.1 + 103128 0.67 0.866407
Target:  5'- -aGAUCGuGGUGaCGCGCCGuAUGGGCGg -3'
miRNA:   3'- ccCUAGC-UCGUgGUGCGGC-UACCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.