miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9593 3' -50.5 NC_002577.1 + 16505 0.7 0.933838
Target:  5'- aGAUGaGGGcGGggGGGUuGGCCGGGAGg -3'
miRNA:   3'- -CUACcUUC-CCuuUCCGuUUGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 121903 0.7 0.93331
Target:  5'- --cGGAgccGGGGAcggagGGGGCGAcccggacGCCGGAGAg -3'
miRNA:   3'- cuaCCU---UCCCU-----UUCCGUU-------UGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 11711 0.7 0.93331
Target:  5'- --cGGAgccGGGGAcggagGGGGCGAcccggacGCCGGAGAg -3'
miRNA:   3'- cuaCCU---UCCCU-----UUCCGUU-------UGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 156943 0.7 0.922204
Target:  5'- cGUGGAgAGGGGuuGGCGGaggugggguagacGCCGGAGg -3'
miRNA:   3'- cUACCU-UCCCUuuCCGUU-------------UGGCCUUu -5'
9593 3' -50.5 NC_002577.1 + 140395 0.7 0.922204
Target:  5'- cGUGGAgAGGGGuuGGCGGaggugggguagacGCCGGAGg -3'
miRNA:   3'- cUACCU-UCCCUuuCCGUU-------------UGGCCUUu -5'
9593 3' -50.5 NC_002577.1 + 11716 0.71 0.91686
Target:  5'- --aGGggGGaGGGAGGguAGCCGGc-- -3'
miRNA:   3'- cuaCCuuCC-CUUUCCguUUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 121897 0.71 0.91686
Target:  5'- --aGGggGGaGGGAGGguAGCCGGc-- -3'
miRNA:   3'- cuaCCuuCC-CUUUCCguUUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 127465 0.71 0.910673
Target:  5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 127491 0.71 0.910673
Target:  5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6175 0.71 0.910673
Target:  5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6123 0.71 0.910673
Target:  5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6149 0.71 0.910673
Target:  5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 127439 0.71 0.910673
Target:  5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 140292 0.71 0.904223
Target:  5'- --cGGAGGGGAGcgGGuGCGAGgCGGggGg -3'
miRNA:   3'- cuaCCUUCCCUU--UC-CGUUUgGCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 157046 0.71 0.904223
Target:  5'- --cGGAGGGGAGcgGGuGCGAGgCGGggGg -3'
miRNA:   3'- cuaCCUUCCCUU--UC-CGUUUgGCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 126965 0.72 0.87587
Target:  5'- uGggGGggGGGGGAGGCcugaacGGCCGGc-- -3'
miRNA:   3'- -CuaCCuuCCCUUUCCGu-----UUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 6648 0.72 0.87587
Target:  5'- uGggGGggGGGGGAGGCcugaacGGCCGGc-- -3'
miRNA:   3'- -CuaCCuuCCCUUUCCGu-----UUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 158318 0.72 0.868166
Target:  5'- --cGGGAGGGAGcgcgguGGCGGGCgGGggGg -3'
miRNA:   3'- cuaCCUUCCCUUu-----CCGUUUGgCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 139019 0.72 0.868166
Target:  5'- --cGGGAGGGAGcgcgguGGCGGGCgGGggGg -3'
miRNA:   3'- cuaCCUUCCCUUu-----CCGUUUGgCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 33095 0.73 0.808073
Target:  5'- aGUGGucGGGGAGGGCAGGCguaaGGAu- -3'
miRNA:   3'- cUACCuuCCCUUUCCGUUUGg---CCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.