miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9593 3' -50.5 NC_002577.1 + 126278 0.68 0.97083
Target:  5'- uAUGGggGGGGGAGGgGGGggGGggGg -3'
miRNA:   3'- cUACCuuCCCUUUCCgUUUggCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 140724 0.68 0.97083
Target:  5'- gGggGGguGGGggGGGCAcGCCcgaGGGAGg -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGUuUGG---CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 7336 0.68 0.97083
Target:  5'- uAUGGggGGGGGAGGgGGGggGGggGg -3'
miRNA:   3'- cUACCuuCCCUUUCCgUUUggCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 156613 0.68 0.97083
Target:  5'- gGggGGguGGGggGGGCAcGCCcgaGGGAGg -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGUuUGG---CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 142025 0.68 0.97083
Target:  5'- uGggGGggGGGggGGGUGgugguGGuuGGAGAc -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGU-----UUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 11615 0.68 0.967697
Target:  5'- uGggGGAAGGGAAGGGgGAgacgGCCGa--- -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUU----UGGCcuuu -5'
9593 3' -50.5 NC_002577.1 + 121998 0.68 0.967697
Target:  5'- uGggGGAAGGGAAGGGgGAgacgGCCGa--- -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUU----UGGCcuuu -5'
9593 3' -50.5 NC_002577.1 + 6208 0.69 0.964333
Target:  5'- --gGGAGGGGggGGGgAGAagaGGGGAa -3'
miRNA:   3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 127406 0.69 0.964333
Target:  5'- --gGGAGGGGggGGGgAGAagaGGGGAa -3'
miRNA:   3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 128536 0.69 0.956885
Target:  5'- -uUGGGAGGGcucuGGGCGAagaACCGGc-- -3'
miRNA:   3'- cuACCUUCCCuu--UCCGUU---UGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 5078 0.69 0.956885
Target:  5'- -uUGGGAGGGcucuGGGCGAagaACCGGc-- -3'
miRNA:   3'- cuACCUUCCCuu--UCCGUU---UGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 52202 0.69 0.955683
Target:  5'- --cGGAGGGGAuauuauccgaggugGGGGCuc-CCGGGGAa -3'
miRNA:   3'- cuaCCUUCCCU--------------UUCCGuuuGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 124100 0.69 0.948441
Target:  5'- uGggGGggGGGggGGGgAGGgaGGGAAa -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 9514 0.69 0.948441
Target:  5'- uGggGGggGGGggGGGgAGGgaGGGAAa -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 122676 0.7 0.938968
Target:  5'- gGGUGGAAGGGGgauggguaccgAGGGCAucgAACUGGc-- -3'
miRNA:   3'- -CUACCUUCCCU-----------UUCCGU---UUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 140507 0.7 0.938968
Target:  5'- gGggGGAGGGGAAccgugcggagggGGGguAugCGGAGGu -3'
miRNA:   3'- -CuaCCUUCCCUU------------UCCguUugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 156831 0.7 0.938968
Target:  5'- gGggGGAGGGGAAccgugcggagggGGGguAugCGGAGGu -3'
miRNA:   3'- -CuaCCUUCCCUU------------UCCguUugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 1540 0.7 0.938968
Target:  5'- aAUGGggGGGggGGGgGGAgaGGGu- -3'
miRNA:   3'- cUACCuuCCCuuUCCgUUUggCCUuu -5'
9593 3' -50.5 NC_002577.1 + 132074 0.7 0.938968
Target:  5'- aAUGGggGGGggGGGgGGAgaGGGu- -3'
miRNA:   3'- cUACCuuCCCuuUCCgUUUggCCUuu -5'
9593 3' -50.5 NC_002577.1 + 10938 0.7 0.938968
Target:  5'- gGGUGGAAGGGGgauggguaccgAGGGCAucgAACUGGc-- -3'
miRNA:   3'- -CUACCUUCCCU-----------UUCCGU---UUGGCCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.