miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9593 3' -50.5 NC_002577.1 + 9629 0.68 0.978916
Target:  5'- --cGGggGGGAGGGGaaaAGAcguuugcguuauCCGGAAu -3'
miRNA:   3'- cuaCCuuCCCUUUCCg--UUU------------GGCCUUu -5'
9593 3' -50.5 NC_002577.1 + 10938 0.7 0.938968
Target:  5'- gGGUGGAAGGGGgauggguaccgAGGGCAucgAACUGGc-- -3'
miRNA:   3'- -CUACCUUCCCU-----------UUCCGU---UUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 11045 0.66 0.993416
Target:  5'- cGUGGGAGGGggGcGGCGuuucuagcccccGGCgCGGGc- -3'
miRNA:   3'- cUACCUUCCCuuU-CCGU------------UUG-GCCUuu -5'
9593 3' -50.5 NC_002577.1 + 11615 0.68 0.967697
Target:  5'- uGggGGAAGGGAAGGGgGAgacgGCCGa--- -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUU----UGGCcuuu -5'
9593 3' -50.5 NC_002577.1 + 11711 0.7 0.93331
Target:  5'- --cGGAgccGGGGAcggagGGGGCGAcccggacGCCGGAGAg -3'
miRNA:   3'- cuaCCU---UCCCU-----UUCCGUU-------UGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 11716 0.71 0.91686
Target:  5'- --aGGggGGaGGGAGGguAGCCGGc-- -3'
miRNA:   3'- cuaCCuuCC-CUUUCCguUUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 16505 0.7 0.933838
Target:  5'- aGAUGaGGGcGGggGGGUuGGCCGGGAGg -3'
miRNA:   3'- -CUACcUUC-CCuuUCCGuUUGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 19277 0.66 0.992388
Target:  5'- aGAUGGGgcGGGGAAucuauaaaauAGGCAAgguccGCgCGGAu- -3'
miRNA:   3'- -CUACCU--UCCCUU----------UCCGUU-----UG-GCCUuu -5'
9593 3' -50.5 NC_002577.1 + 33095 0.73 0.808073
Target:  5'- aGUGGucGGGGAGGGCAGGCguaaGGAu- -3'
miRNA:   3'- cUACCuuCCCUUUCCGUUUGg---CCUuu -5'
9593 3' -50.5 NC_002577.1 + 52202 0.69 0.955683
Target:  5'- --cGGAGGGGAuauuauccgaggugGGGGCuc-CCGGGGAa -3'
miRNA:   3'- cuaCCUUCCCU--------------UUCCGuuuGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 57184 0.74 0.759683
Target:  5'- --cGGGAGGGAGuGGGUucGCCGGGAc -3'
miRNA:   3'- cuaCCUUCCCUU-UCCGuuUGGCCUUu -5'
9593 3' -50.5 NC_002577.1 + 121897 0.71 0.91686
Target:  5'- --aGGggGGaGGGAGGguAGCCGGc-- -3'
miRNA:   3'- cuaCCuuCC-CUUUCCguUUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 121903 0.7 0.93331
Target:  5'- --cGGAgccGGGGAcggagGGGGCGAcccggacGCCGGAGAg -3'
miRNA:   3'- cuaCCU---UCCCU-----UUCCGUU-------UGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 121998 0.68 0.967697
Target:  5'- uGggGGAAGGGAAGGGgGAgacgGCCGa--- -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUU----UGGCcuuu -5'
9593 3' -50.5 NC_002577.1 + 122568 0.66 0.993416
Target:  5'- cGUGGGAGGGggGcGGCGuuucuagcccccGGCgCGGGc- -3'
miRNA:   3'- cUACCUUCCCuuU-CCGU------------UUG-GCCUuu -5'
9593 3' -50.5 NC_002577.1 + 122676 0.7 0.938968
Target:  5'- gGGUGGAAGGGGgauggguaccgAGGGCAucgAACUGGc-- -3'
miRNA:   3'- -CUACCUUCCCU-----------UUCCGU---UUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 123984 0.68 0.978916
Target:  5'- --cGGggGGGAGGGGaaaAGAcguuugcguuauCCGGAAu -3'
miRNA:   3'- cuaCCuuCCCUUUCCg--UUU------------GGCCUUu -5'
9593 3' -50.5 NC_002577.1 + 124100 0.69 0.948441
Target:  5'- uGggGGggGGGggGGGgAGGgaGGGAAa -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 124518 0.8 0.456558
Target:  5'- uGUGcGAGGGGggGGGCGacgggcGACCGGGAAu -3'
miRNA:   3'- cUAC-CUUCCCuuUCCGU------UUGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 125119 0.66 0.993416
Target:  5'- gGcgGGggGGGggGGGgGGugUGuGAGu -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUUugGC-CUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.