Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9593 | 3' | -50.5 | NC_002577.1 | + | 131978 | 0.74 | 0.779488 |
Target: 5'- gGggGGggGGGGAGGGgGGAUgGGAAc -3' miRNA: 3'- -CuaCCuuCCCUUUCCgUUUGgCCUUu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 33095 | 0.73 | 0.808073 |
Target: 5'- aGUGGucGGGGAGGGCAGGCguaaGGAu- -3' miRNA: 3'- cUACCuuCCCUUUCCGUUUGg---CCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 139019 | 0.72 | 0.868166 |
Target: 5'- --cGGGAGGGAGcgcgguGGCGGGCgGGggGg -3' miRNA: 3'- cuaCCUUCCCUUu-----CCGUUUGgCCuuU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 158318 | 0.72 | 0.868166 |
Target: 5'- --cGGGAGGGAGcgcgguGGCGGGCgGGggGg -3' miRNA: 3'- cuaCCUUCCCUUu-----CCGUUUGgCCuuU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6648 | 0.72 | 0.87587 |
Target: 5'- uGggGGggGGGGGAGGCcugaacGGCCGGc-- -3' miRNA: 3'- -CuaCCuuCCCUUUCCGu-----UUGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 126965 | 0.72 | 0.87587 |
Target: 5'- uGggGGggGGGGGAGGCcugaacGGCCGGc-- -3' miRNA: 3'- -CuaCCuuCCCUUUCCGu-----UUGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 140292 | 0.71 | 0.904223 |
Target: 5'- --cGGAGGGGAGcgGGuGCGAGgCGGggGg -3' miRNA: 3'- cuaCCUUCCCUU--UC-CGUUUgGCCuuU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 157046 | 0.71 | 0.904223 |
Target: 5'- --cGGAGGGGAGcgGGuGCGAGgCGGggGg -3' miRNA: 3'- cuaCCUUCCCUU--UC-CGUUUgGCCuuU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127491 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6175 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6149 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127439 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127465 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6123 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 11716 | 0.71 | 0.91686 |
Target: 5'- --aGGggGGaGGGAGGguAGCCGGc-- -3' miRNA: 3'- cuaCCuuCC-CUUUCCguUUGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 121897 | 0.71 | 0.91686 |
Target: 5'- --aGGggGGaGGGAGGguAGCCGGc-- -3' miRNA: 3'- cuaCCuuCC-CUUUCCguUUGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 156943 | 0.7 | 0.922204 |
Target: 5'- cGUGGAgAGGGGuuGGCGGaggugggguagacGCCGGAGg -3' miRNA: 3'- cUACCU-UCCCUuuCCGUU-------------UGGCCUUu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 140395 | 0.7 | 0.922204 |
Target: 5'- cGUGGAgAGGGGuuGGCGGaggugggguagacGCCGGAGg -3' miRNA: 3'- cUACCU-UCCCUuuCCGUU-------------UGGCCUUu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 121903 | 0.7 | 0.93331 |
Target: 5'- --cGGAgccGGGGAcggagGGGGCGAcccggacGCCGGAGAg -3' miRNA: 3'- cuaCCU---UCCCU-----UUCCGUU-------UGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 11711 | 0.7 | 0.93331 |
Target: 5'- --cGGAgccGGGGAcggagGGGGCGAcccggacGCCGGAGAg -3' miRNA: 3'- cuaCCU---UCCCU-----UUCCGUU-------UGGCCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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