miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9593 3' -50.5 NC_002577.1 + 126751 1.07 0.011297
Target:  5'- cGAUGGAAGGGAAAGGCAAACCGGAAAa -3'
miRNA:   3'- -CUACCUUCCCUUUCCGUUUGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6862 1.07 0.011297
Target:  5'- cGAUGGAAGGGAAAGGCAAACCGGAAAa -3'
miRNA:   3'- -CUACCUUCCCUUUCCGUUUGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 161817 0.82 0.382736
Target:  5'- -cUGGAAGGGGAcGGCGGuccGCCGGAGAc -3'
miRNA:   3'- cuACCUUCCCUUuCCGUU---UGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 135520 0.82 0.382736
Target:  5'- -cUGGAAGGGGAcGGCGGuccGCCGGAGAc -3'
miRNA:   3'- cuACCUUCCCUUuCCGUU---UGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 124518 0.8 0.456558
Target:  5'- uGUGcGAGGGGggGGGCGacgggcGACCGGGAAu -3'
miRNA:   3'- cUAC-CUUCCCuuUCCGU------UUGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 9096 0.8 0.456558
Target:  5'- uGUGcGAGGGGggGGGCGacgggcGACCGGGAAu -3'
miRNA:   3'- cUAC-CUUCCCuuUCCGU------UUGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 129737 0.79 0.516634
Target:  5'- uGUGGggGGGggGGGCGGGaaGGAu- -3'
miRNA:   3'- cUACCuuCCCuuUCCGUUUggCCUuu -5'
9593 3' -50.5 NC_002577.1 + 6303 0.77 0.644105
Target:  5'- gGggGGAGGGGGAAGGCugaaCGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 127311 0.77 0.644105
Target:  5'- gGggGGAGGGGGAAGGCugaaCGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6264 0.76 0.665607
Target:  5'- gGggGGAGGGGGAAGGCugaaCGGAGGu -3'
miRNA:   3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 127350 0.76 0.665607
Target:  5'- gGggGGAGGGGGAAGGCugaaCGGAGGu -3'
miRNA:   3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 154861 0.76 0.676318
Target:  5'- gGggGGggGGGggGGcGCGggUCGGGGAa -3'
miRNA:   3'- -CuaCCuuCCCuuUC-CGUuuGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 142477 0.76 0.676318
Target:  5'- gGggGGggGGGggGGcGCGggUCGGGGAa -3'
miRNA:   3'- -CuaCCuuCCCuuUC-CGUuuGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 2702 0.75 0.739378
Target:  5'- --gGGggGGGggGGGgGGugUGGAAGg -3'
miRNA:   3'- cuaCCuuCCCuuUCCgUUugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 3874 0.75 0.739378
Target:  5'- --gGGggGGGggGGGCGGGaaGGAu- -3'
miRNA:   3'- cuaCCuuCCCuuUCCGUUUggCCUuu -5'
9593 3' -50.5 NC_002577.1 + 130911 0.75 0.739378
Target:  5'- --gGGggGGGggGGGgGGugUGGAAGg -3'
miRNA:   3'- cuaCCuuCCCuuUCCgUUugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 157949 0.75 0.748572
Target:  5'- gGGUGGAAGgccGGGAAGGCAgcccgaaccccugGACCGGGc- -3'
miRNA:   3'- -CUACCUUC---CCUUUCCGU-------------UUGGCCUuu -5'
9593 3' -50.5 NC_002577.1 + 139388 0.75 0.748572
Target:  5'- gGGUGGAAGgccGGGAAGGCAgcccgaaccccugGACCGGGc- -3'
miRNA:   3'- -CUACCUUC---CCUUUCCGU-------------UUGGCCUuu -5'
9593 3' -50.5 NC_002577.1 + 57184 0.74 0.759683
Target:  5'- --cGGGAGGGAGuGGGUucGCCGGGAc -3'
miRNA:   3'- cuaCCUUCCCUU-UCCGuuUGGCCUUu -5'
9593 3' -50.5 NC_002577.1 + 131978 0.74 0.779488
Target:  5'- gGggGGggGGGGAGGGgGGAUgGGAAc -3'
miRNA:   3'- -CuaCCuuCCCUUUCCgUUUGgCCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.