miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9593 3' -50.5 NC_002577.1 + 1142 0.66 0.993416
Target:  5'- --aGGggGGGAugcGGCGcuguagucGCCGGAu- -3'
miRNA:   3'- cuaCCuuCCCUuu-CCGUu-------UGGCCUuu -5'
9593 3' -50.5 NC_002577.1 + 1540 0.7 0.938968
Target:  5'- aAUGGggGGGggGGGgGGAgaGGGu- -3'
miRNA:   3'- cUACCuuCCCuuUCCgUUUggCCUuu -5'
9593 3' -50.5 NC_002577.1 + 1636 0.74 0.779488
Target:  5'- gGggGGggGGGGAGGGgGGAUgGGAAc -3'
miRNA:   3'- -CuaCCuuCCCUUUCCgUUUGgCCUUu -5'
9593 3' -50.5 NC_002577.1 + 2702 0.75 0.739378
Target:  5'- --gGGggGGGggGGGgGGugUGGAAGg -3'
miRNA:   3'- cuaCCuuCCCuuUCCgUUugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 3874 0.75 0.739378
Target:  5'- --gGGggGGGggGGGCGGGaaGGAu- -3'
miRNA:   3'- cuaCCuuCCCuuUCCGUUUggCCUuu -5'
9593 3' -50.5 NC_002577.1 + 5078 0.69 0.956885
Target:  5'- -uUGGGAGGGcucuGGGCGAagaACCGGc-- -3'
miRNA:   3'- cuACCUUCCCuu--UCCGUU---UGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 6081 0.66 0.989954
Target:  5'- --gGGGAGGGggGGGgAAGggaGGAAGa -3'
miRNA:   3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6123 0.71 0.910673
Target:  5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6149 0.71 0.910673
Target:  5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6175 0.71 0.910673
Target:  5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6208 0.69 0.964333
Target:  5'- --gGGAGGGGggGGGgAGAagaGGGGAa -3'
miRNA:   3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6264 0.76 0.665607
Target:  5'- gGggGGAGGGGGAAGGCugaaCGGAGGu -3'
miRNA:   3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6303 0.77 0.644105
Target:  5'- gGggGGAGGGGGAAGGCugaaCGGAGGg -3'
miRNA:   3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 6648 0.72 0.87587
Target:  5'- uGggGGggGGGGGAGGCcugaacGGCCGGc-- -3'
miRNA:   3'- -CuaCCuuCCCUUUCCGu-----UUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 6862 1.07 0.011297
Target:  5'- cGAUGGAAGGGAAAGGCAAACCGGAAAa -3'
miRNA:   3'- -CUACCUUCCCUUUCCGUUUGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 7336 0.68 0.97083
Target:  5'- uAUGGggGGGGGAGGgGGGggGGggGg -3'
miRNA:   3'- cUACCuuCCCUUUCCgUUUggCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 7582 0.67 0.985024
Target:  5'- gGggGGggGGGggGGGgGAuccgaaccgugcgGCgGGAAGg -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUU-------------UGgCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 8495 0.66 0.993416
Target:  5'- gGcgGGggGGGggGGGgGGugUGuGAGu -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUUugGC-CUUu -5'
9593 3' -50.5 NC_002577.1 + 9096 0.8 0.456558
Target:  5'- uGUGcGAGGGGggGGGCGacgggcGACCGGGAAu -3'
miRNA:   3'- cUAC-CUUCCCuuUCCGU------UUGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 9514 0.69 0.948441
Target:  5'- uGggGGggGGGggGGGgAGGgaGGGAAa -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUUUggCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.