miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9593 3' -50.5 NC_002577.1 + 162973 0.67 0.984081
Target:  5'- gGggGGggGGGggGGGCGcgacuccaagcguuaGACCGc--- -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGU---------------UUGGCcuuu -5'
9593 3' -50.5 NC_002577.1 + 161817 0.82 0.382736
Target:  5'- -cUGGAAGGGGAcGGCGGuccGCCGGAGAc -3'
miRNA:   3'- cuACCUUCCCUUuCCGUU---UGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 160636 0.66 0.992388
Target:  5'- -uUGGgcGGGAAAGGC---CCGGc-- -3'
miRNA:   3'- cuACCuuCCCUUUCCGuuuGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 160094 0.67 0.9812
Target:  5'- uGUGGGuc-GAGGGGCGAACCGGu-- -3'
miRNA:   3'- cUACCUuccCUUUCCGUUUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 158318 0.72 0.868166
Target:  5'- --cGGGAGGGAGcgcgguGGCGGGCgGGggGg -3'
miRNA:   3'- cuaCCUUCCCUUu-----CCGUUUGgCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 157949 0.75 0.748572
Target:  5'- gGGUGGAAGgccGGGAAGGCAgcccgaaccccugGACCGGGc- -3'
miRNA:   3'- -CUACCUUC---CCUUUCCGU-------------UUGGCCUuu -5'
9593 3' -50.5 NC_002577.1 + 157046 0.71 0.904223
Target:  5'- --cGGAGGGGAGcgGGuGCGAGgCGGggGg -3'
miRNA:   3'- cuaCCUUCCCUU--UC-CGUUUgGCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 156943 0.7 0.922204
Target:  5'- cGUGGAgAGGGGuuGGCGGaggugggguagacGCCGGAGg -3'
miRNA:   3'- cUACCU-UCCCUuuCCGUU-------------UGGCCUUu -5'
9593 3' -50.5 NC_002577.1 + 156831 0.7 0.938968
Target:  5'- gGggGGAGGGGAAccgugcggagggGGGguAugCGGAGGu -3'
miRNA:   3'- -CuaCCUUCCCUU------------UCCguUugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 156613 0.68 0.97083
Target:  5'- gGggGGguGGGggGGGCAcGCCcgaGGGAGg -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGUuUGG---CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 155313 0.66 0.989954
Target:  5'- uGggGGggGGGggGGGUGGugguGgUGGAGAc -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGUU----UgGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 154861 0.76 0.676318
Target:  5'- gGggGGggGGGggGGcGCGggUCGGGGAa -3'
miRNA:   3'- -CuaCCuuCCCuuUC-CGUuuGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 142477 0.76 0.676318
Target:  5'- gGggGGggGGGggGGcGCGggUCGGGGAa -3'
miRNA:   3'- -CuaCCuuCCCuuUC-CGUuuGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 142025 0.68 0.97083
Target:  5'- uGggGGggGGGggGGGUGgugguGGuuGGAGAc -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGU-----UUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 140724 0.68 0.97083
Target:  5'- gGggGGguGGGggGGGCAcGCCcgaGGGAGg -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGUuUGG---CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 140507 0.7 0.938968
Target:  5'- gGggGGAGGGGAAccgugcggagggGGGguAugCGGAGGu -3'
miRNA:   3'- -CuaCCUUCCCUU------------UCCguUugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 140395 0.7 0.922204
Target:  5'- cGUGGAgAGGGGuuGGCGGaggugggguagacGCCGGAGg -3'
miRNA:   3'- cUACCU-UCCCUuuCCGUU-------------UGGCCUUu -5'
9593 3' -50.5 NC_002577.1 + 140292 0.71 0.904223
Target:  5'- --cGGAGGGGAGcgGGuGCGAGgCGGggGg -3'
miRNA:   3'- cuaCCUUCCCUU--UC-CGUUUgGCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 139388 0.75 0.748572
Target:  5'- gGGUGGAAGgccGGGAAGGCAgcccgaaccccugGACCGGGc- -3'
miRNA:   3'- -CUACCUUC---CCUUUCCGU-------------UUGGCCUuu -5'
9593 3' -50.5 NC_002577.1 + 139019 0.72 0.868166
Target:  5'- --cGGGAGGGAGcgcgguGGCGGGCgGGggGg -3'
miRNA:   3'- cuaCCUUCCCUUu-----CCGUUUGgCCuuU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.