Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9595 | 3' | -48.5 | NC_002577.1 | + | 125017 | 0.69 | 0.996423 |
Target: 5'- -gGUCGGAACucgCGAcUUCCACggUCGc -3' miRNA: 3'- ggCAGCCUUG---GCUuAAGGUGuaAGCu -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 125109 | 0.69 | 0.99511 |
Target: 5'- gCgGcCGGGACgGGAUUCCugAUUCc- -3' miRNA: 3'- -GgCaGCCUUGgCUUAAGGugUAAGcu -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 128027 | 0.68 | 0.998493 |
Target: 5'- gCCGcUCGGAccGCUGcGAUUCCAUccUUCGAc -3' miRNA: 3'- -GGC-AGCCU--UGGC-UUAAGGUGu-AAGCU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 132846 | 0.66 | 0.999617 |
Target: 5'- aCGcUCGGGGCCGggUacaaguugcccgggUCCGCGggUCuGAa -3' miRNA: 3'- gGC-AGCCUUGGCuuA--------------AGGUGUa-AG-CU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 134619 | 0.66 | 0.999709 |
Target: 5'- gCCGUCGGGAUccugcaaCGAGcUCCGCuccgUGAa -3' miRNA: 3'- -GGCAGCCUUG-------GCUUaAGGUGuaa-GCU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 136992 | 0.79 | 0.730965 |
Target: 5'- gCCGUCGaGAACCcGcgUCCGCGUUUGGg -3' miRNA: 3'- -GGCAGC-CUUGGcUuaAGGUGUAAGCU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 138942 | 0.68 | 0.997839 |
Target: 5'- gCCGUgGGGcgucccGCCGggUUCCGgAUUUc- -3' miRNA: 3'- -GGCAgCCU------UGGCuuAAGGUgUAAGcu -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 158395 | 0.68 | 0.997839 |
Target: 5'- gCCGUgGGGcgucccGCCGggUUCCGgAUUUc- -3' miRNA: 3'- -GGCAgCCU------UGGCuuAAGGUgUAAGcu -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 160346 | 0.79 | 0.730965 |
Target: 5'- gCCGUCGaGAACCcGcgUCCGCGUUUGGg -3' miRNA: 3'- -GGCAGC-CUUGGcUuaAGGUGUAAGCU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 162708 | 0.66 | 0.999709 |
Target: 5'- gCCGUCGGGAUccugcaaCGAGcUCCGCuccgUGAa -3' miRNA: 3'- -GGCAGCCUUG-------GCUUaAGGUGuaa-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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