Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9595 | 3' | -48.5 | NC_002577.1 | + | 78429 | 0.67 | 0.999314 |
Target: 5'- cCCGUCGGAcUCGAAUUgCCGac--CGAu -3' miRNA: 3'- -GGCAGCCUuGGCUUAA-GGUguaaGCU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 10767 | 0.67 | 0.999314 |
Target: 5'- gCGUCGGcgacgcGGCCGAAcgCCGCucgCGGa -3' miRNA: 3'- gGCAGCC------UUGGCUUaaGGUGuaaGCU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 767 | 0.66 | 0.999617 |
Target: 5'- aCGcUCGGGGCCGggUacaaguugcccgggUCCGCGggUCuGAa -3' miRNA: 3'- gGC-AGCCUUGGCuuA--------------AGGUGUa-AG-CU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 132846 | 0.66 | 0.999617 |
Target: 5'- aCGcUCGGGGCCGggUacaaguugcccgggUCCGCGggUCuGAa -3' miRNA: 3'- gGC-AGCCUUGGCuuA--------------AGGUGUa-AG-CU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 27815 | 0.66 | 0.999642 |
Target: 5'- gCGUCGGuuACUGAAU-CCGgAUUCa- -3' miRNA: 3'- gGCAGCCu-UGGCUUAaGGUgUAAGcu -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 134619 | 0.66 | 0.999709 |
Target: 5'- gCCGUCGGGAUccugcaaCGAGcUCCGCuccgUGAa -3' miRNA: 3'- -GGCAGCCUUG-------GCUUaAGGUGuaa-GCU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 162708 | 0.66 | 0.999709 |
Target: 5'- gCCGUCGGGAUccugcaaCGAGcUCCGCuccgUGAa -3' miRNA: 3'- -GGCAGCCUUG-------GCUUaAGGUGuaa-GCU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 118481 | 0.66 | 0.999716 |
Target: 5'- cCUGUaUGGAACCG--UUCCGaGUUCGGg -3' miRNA: 3'- -GGCA-GCCUUGGCuuAAGGUgUAAGCU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 123068 | 0.66 | 0.999824 |
Target: 5'- -aGUCGGGgggcgacccgcgACCGuGUUCCGCGagCGGc -3' miRNA: 3'- ggCAGCCU------------UGGCuUAAGGUGUaaGCU- -5' |
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9595 | 3' | -48.5 | NC_002577.1 | + | 10546 | 0.66 | 0.999824 |
Target: 5'- -aGUCGGGgggcgacccgcgACCGuGUUCCGCGagCGGc -3' miRNA: 3'- ggCAGCCU------------UGGCuUAAGGUGUaaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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