miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9596 5' -53.4 NC_002577.1 + 163303 0.68 0.921224
Target:  5'- cGCAUGCGCG-CAcGGGUCcGCUaCGCa -3'
miRNA:   3'- cCGUGCGCGUaGUaUUCAG-CGA-GCGc -5'
9596 5' -53.4 NC_002577.1 + 160691 0.7 0.875363
Target:  5'- cGUugGCGCGuucUCcgGAGgccauggcggagaUCGCUCGCGu -3'
miRNA:   3'- cCGugCGCGU---AGuaUUC-------------AGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 156153 0.67 0.950552
Target:  5'- --gGCGCGCAUCAgGGGUCucCUgGCGa -3'
miRNA:   3'- ccgUGCGCGUAGUaUUCAGc-GAgCGC- -5'
9596 5' -53.4 NC_002577.1 + 155312 0.67 0.954605
Target:  5'- cGCACGaacCGCAc----AGUCGCUCGCa -3'
miRNA:   3'- cCGUGC---GCGUaguauUCAGCGAGCGc -5'
9596 5' -53.4 NC_002577.1 + 154706 0.67 0.944932
Target:  5'- cGGCAcCGCGCuccugguaggugcuGUCG--GGUCGCgcgaUCGCGu -3'
miRNA:   3'- -CCGU-GCGCG--------------UAGUauUCAGCG----AGCGC- -5'
9596 5' -53.4 NC_002577.1 + 142630 0.67 0.944932
Target:  5'- cGGCAcCGCGCuccugguaggugcuGUCG--GGUCGCgcgaUCGCGu -3'
miRNA:   3'- -CCGU-GCGCG--------------UAGUauUCAGCG----AGCGC- -5'
9596 5' -53.4 NC_002577.1 + 141185 0.67 0.950552
Target:  5'- --gGCGCGCAUCAgGGGUCucCUgGCGa -3'
miRNA:   3'- ccgUGCGCGUAGUaUUCAGc-GAgCGC- -5'
9596 5' -53.4 NC_002577.1 + 136646 0.7 0.875363
Target:  5'- cGUugGCGCGuucUCcgGAGgccauggcggagaUCGCUCGCGu -3'
miRNA:   3'- cCGugCGCGU---AGuaUUC-------------AGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 134024 0.68 0.921224
Target:  5'- cGCAUGCGCG-CAcGGGUCcGCUaCGCa -3'
miRNA:   3'- cCGUGCGCGUaGUaUUCAG-CGA-GCGc -5'
9596 5' -53.4 NC_002577.1 + 132110 0.66 0.974243
Target:  5'- uGUGCGCGCAUg------CGCUCGCGc -3'
miRNA:   3'- cCGUGCGCGUAguauucaGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 128827 0.69 0.903296
Target:  5'- cGGCGCG-GCGUCGUcgcgCGC-CGCGg -3'
miRNA:   3'- -CCGUGCgCGUAGUAuucaGCGaGCGC- -5'
9596 5' -53.4 NC_002577.1 + 125912 0.7 0.87609
Target:  5'- cGGCcCGCGgAUUcgGAucgCGCUCGCGa -3'
miRNA:   3'- -CCGuGCGCgUAGuaUUca-GCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 125650 0.68 0.936974
Target:  5'- gGGCGCGgGCAgg--GAGUUaacCUCGCGa -3'
miRNA:   3'- -CCGUGCgCGUaguaUUCAGc--GAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 124624 1.12 0.003684
Target:  5'- gGGCACGCGCAUCAUAAGUCGCUCGCGg -3'
miRNA:   3'- -CCGUGCGCGUAGUAUUCAGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 124446 0.66 0.976789
Target:  5'- uGGCGCGgGCGggg-GAGUCcgUCGCGu -3'
miRNA:   3'- -CCGUGCgCGUaguaUUCAGcgAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 121774 0.8 0.376452
Target:  5'- gGGCGCGCGgAUCAgcggucGGGUCGCgaUCGCGu -3'
miRNA:   3'- -CCGUGCGCgUAGUa-----UUCAGCG--AGCGC- -5'
9596 5' -53.4 NC_002577.1 + 102000 0.67 0.95421
Target:  5'- gGGCcaaaaauACG-GUAUCA-AAGUCGCUCGgGg -3'
miRNA:   3'- -CCG-------UGCgCGUAGUaUUCAGCGAGCgC- -5'
9596 5' -53.4 NC_002577.1 + 85182 0.69 0.909512
Target:  5'- cGGcCugGCGUAUCGU---UCGUUCGUGc -3'
miRNA:   3'- -CC-GugCGCGUAGUAuucAGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 76337 0.69 0.917812
Target:  5'- cGGCugGCGaCGcUCGUuguaacaagggagacGAGUCGCggCGCa -3'
miRNA:   3'- -CCGugCGC-GU-AGUA---------------UUCAGCGa-GCGc -5'
9596 5' -53.4 NC_002577.1 + 71149 0.77 0.512932
Target:  5'- cGGCGCGCGCAacUCGc--GUCGCguaggCGCGa -3'
miRNA:   3'- -CCGUGCGCGU--AGUauuCAGCGa----GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.