Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9597 | 3' | -54.1 | NC_002577.1 | + | 123614 | 1.1 | 0.003862 |
Target: 5'- cAUAUAUGCAACCCCGCGACCCUCUCCu -3' miRNA: 3'- -UAUAUACGUUGGGGCGCUGGGAGAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 10000 | 1.1 | 0.003862 |
Target: 5'- cAUAUAUGCAACCCCGCGACCCUCUCCu -3' miRNA: 3'- -UAUAUACGUUGGGGCGCUGGGAGAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 148818 | 0.79 | 0.364493 |
Target: 5'- -aAUAUGCAAUCCCacuGCGGCCUccuuUCUCCa -3' miRNA: 3'- uaUAUACGUUGGGG---CGCUGGG----AGAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 54432 | 0.76 | 0.480019 |
Target: 5'- ---gGUGCAA-UCCGCGGCCCuUCUCCc -3' miRNA: 3'- uauaUACGUUgGGGCGCUGGG-AGAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 45242 | 0.73 | 0.63142 |
Target: 5'- --uUAUGCGGCCCCGgGAgCUcuacaUCUCCc -3' miRNA: 3'- uauAUACGUUGGGGCgCUgGG-----AGAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 123515 | 0.73 | 0.672812 |
Target: 5'- -----cGCGACgCCGCGGCCCg-UCCa -3' miRNA: 3'- uauauaCGUUGgGGCGCUGGGagAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 10099 | 0.73 | 0.672812 |
Target: 5'- -----cGCGACgCCGCGGCCCg-UCCa -3' miRNA: 3'- uauauaCGUUGgGGCGCUGGGagAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 156233 | 0.72 | 0.723711 |
Target: 5'- -----gGCGGCCCCGCGGUCCUgUUCu -3' miRNA: 3'- uauauaCGUUGGGGCGCUGGGAgAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 141105 | 0.72 | 0.723711 |
Target: 5'- -----gGCGGCCCCGCGGUCCUgUUCu -3' miRNA: 3'- uauauaCGUUGGGGCGCUGGGAgAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 9771 | 0.71 | 0.772587 |
Target: 5'- uGUGUGUGCAACaaaGCGAgaCCCUCUaCCc -3' miRNA: 3'- -UAUAUACGUUGgggCGCU--GGGAGA-GG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 123843 | 0.71 | 0.772587 |
Target: 5'- uGUGUGUGCAACaaaGCGAgaCCCUCUaCCc -3' miRNA: 3'- -UAUAUACGUUGgggCGCU--GGGAGA-GG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 8878 | 0.71 | 0.782014 |
Target: 5'- gAUAUAaaCAGCCCCGCGGUCCacCUCCu -3' miRNA: 3'- -UAUAUacGUUGGGGCGCUGGGa-GAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 161252 | 0.69 | 0.866498 |
Target: 5'- ---gGUGCAccgucucGCCCCGCaGCCaaugCUCCg -3' miRNA: 3'- uauaUACGU-------UGGGGCGcUGGga--GAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 136086 | 0.69 | 0.866498 |
Target: 5'- ---gGUGCAccgucucGCCCCGCaGCCaaugCUCCg -3' miRNA: 3'- uauaUACGU-------UGGGGCGcUGGga--GAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 9266 | 0.69 | 0.874701 |
Target: 5'- ----cUGCGuuuCCCCGCacGGCCCUCgaaaCCa -3' miRNA: 3'- uauauACGUu--GGGGCG--CUGGGAGa---GG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 124348 | 0.69 | 0.874701 |
Target: 5'- ----cUGCGuuuCCCCGCacGGCCCUCgaaaCCa -3' miRNA: 3'- uauauACGUu--GGGGCG--CUGGGAGa---GG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 85470 | 0.68 | 0.88892 |
Target: 5'- cUGUA-GCGACCCUGCugGGCCgUCUgCCc -3' miRNA: 3'- uAUAUaCGUUGGGGCG--CUGGgAGA-GG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 162083 | 0.68 | 0.88892 |
Target: 5'- -----cGgAACCCCGCGGCUCgguugcgUUCCg -3' miRNA: 3'- uauauaCgUUGGGGCGCUGGGa------GAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 135247 | 0.68 | 0.88892 |
Target: 5'- -----aGCGgaACCCCGCGGCUCgguugcgUUCCg -3' miRNA: 3'- uauauaCGU--UGGGGCGCUGGGa------GAGG- -5' |
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9597 | 3' | -54.1 | NC_002577.1 | + | 139688 | 0.68 | 0.898323 |
Target: 5'- -----cGCAACCCUGCGAuucuaagacgcuuucCCCgUCUCg -3' miRNA: 3'- uauauaCGUUGGGGCGCU---------------GGG-AGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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