miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9597 3' -54.1 NC_002577.1 + 45242 0.73 0.63142
Target:  5'- --uUAUGCGGCCCCGgGAgCUcuacaUCUCCc -3'
miRNA:   3'- uauAUACGUUGGGGCgCUgGG-----AGAGG- -5'
9597 3' -54.1 NC_002577.1 + 153861 0.66 0.95413
Target:  5'- cUGUAUGCGccgACCCaaaGCcGCCUcCUCCu -3'
miRNA:   3'- uAUAUACGU---UGGGg--CGcUGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 11649 0.66 0.957999
Target:  5'- -----cGCGACCcgaccgcugauCCGCGcGCCC-CUCCg -3'
miRNA:   3'- uauauaCGUUGG-----------GGCGC-UGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 43286 0.66 0.961638
Target:  5'- ---aAUGUAucGCCCCgGCcGCCCUC-CCu -3'
miRNA:   3'- uauaUACGU--UGGGG-CGcUGGGAGaGG- -5'
9597 3' -54.1 NC_002577.1 + 161252 0.69 0.866498
Target:  5'- ---gGUGCAccgucucGCCCCGCaGCCaaugCUCCg -3'
miRNA:   3'- uauaUACGU-------UGGGGCGcUGGga--GAGG- -5'
9597 3' -54.1 NC_002577.1 + 9266 0.69 0.874701
Target:  5'- ----cUGCGuuuCCCCGCacGGCCCUCgaaaCCa -3'
miRNA:   3'- uauauACGUu--GGGGCG--CUGGGAGa---GG- -5'
9597 3' -54.1 NC_002577.1 + 139688 0.68 0.898323
Target:  5'- -----cGCAACCCUGCGAuucuaagacgcuuucCCCgUCUCg -3'
miRNA:   3'- uauauaCGUUGGGGCGCU---------------GGG-AGAGg -5'
9597 3' -54.1 NC_002577.1 + 123614 1.1 0.003862
Target:  5'- cAUAUAUGCAACCCCGCGACCCUCUCCu -3'
miRNA:   3'- -UAUAUACGUUGGGGCGCUGGGAGAGG- -5'
9597 3' -54.1 NC_002577.1 + 148818 0.79 0.364493
Target:  5'- -aAUAUGCAAUCCCacuGCGGCCUccuuUCUCCa -3'
miRNA:   3'- uaUAUACGUUGGGG---CGCUGGG----AGAGG- -5'
9597 3' -54.1 NC_002577.1 + 4787 0.66 0.950028
Target:  5'- -----aGCGACCaCCGCGugcuACCCUCg-- -3'
miRNA:   3'- uauauaCGUUGG-GGCGC----UGGGAGagg -5'
9597 3' -54.1 NC_002577.1 + 161499 0.67 0.931219
Target:  5'- -----cGCAGCCuCCuCGGCCCUUguggCCg -3'
miRNA:   3'- uauauaCGUUGG-GGcGCUGGGAGa---GG- -5'
9597 3' -54.1 NC_002577.1 + 134687 0.67 0.920349
Target:  5'- ---gGUGCGGCCCCGUccGACUUUgccgugggaggCUCCa -3'
miRNA:   3'- uauaUACGUUGGGGCG--CUGGGA-----------GAGG- -5'
9597 3' -54.1 NC_002577.1 + 123515 0.73 0.672812
Target:  5'- -----cGCGACgCCGCGGCCCg-UCCa -3'
miRNA:   3'- uauauaCGUUGgGGCGCUGGGagAGG- -5'
9597 3' -54.1 NC_002577.1 + 75211 0.67 0.931219
Target:  5'- ----cUGCAAugUCUCGCacGCCCUCUCCc -3'
miRNA:   3'- uauauACGUU--GGGGCGc-UGGGAGAGG- -5'
9597 3' -54.1 NC_002577.1 + 156233 0.72 0.723711
Target:  5'- -----gGCGGCCCCGCGGUCCUgUUCu -3'
miRNA:   3'- uauauaCGUUGGGGCGCUGGGAgAGG- -5'
9597 3' -54.1 NC_002577.1 + 131848 0.68 0.899629
Target:  5'- -gGUAgGCGcgaagguuggGCCCguuagggcuaggaGCGACCCUCUCCc -3'
miRNA:   3'- uaUAUaCGU----------UGGGg------------CGCUGGGAGAGG- -5'
9597 3' -54.1 NC_002577.1 + 71847 0.67 0.941108
Target:  5'- uUGUAgaucUGCcauuGCCgCCGCGACCgUCUUg -3'
miRNA:   3'- uAUAU----ACGu---UGG-GGCGCUGGgAGAGg -5'
9597 3' -54.1 NC_002577.1 + 141363 0.66 0.957999
Target:  5'- -----gGCAGCaCUgGCGAUCCgCUCCu -3'
miRNA:   3'- uauauaCGUUG-GGgCGCUGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 9771 0.71 0.772587
Target:  5'- uGUGUGUGCAACaaaGCGAgaCCCUCUaCCc -3'
miRNA:   3'- -UAUAUACGUUGgggCGCU--GGGAGA-GG- -5'
9597 3' -54.1 NC_002577.1 + 162083 0.68 0.88892
Target:  5'- -----cGgAACCCCGCGGCUCgguugcgUUCCg -3'
miRNA:   3'- uauauaCgUUGGGGCGCUGGGa------GAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.