miRNA: 3'- uauCGAAuAGG-CGCua-UGCGGCGG-GG- -5'
miRNA: 3'- uaUCGaauaGG-----CGCUA---UGCGGCGGGG- -5'
miRNA: 3'- -UAUCGAau-AGGcGCUAUGCG-GCGGGG- -5'
miRNA: 3'- uaUCGaaua-GGCgCUa------UGCGGCGGGG- -5'
miRNA: 3'- -UAUCgaa-UAGGCGCUau--GCGGCGGGG- -5'
Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 9598 | 5' | -54.9 | NC_002577.1 | + | 139548 | 0.69 | 0.846748 |
|
Target: 5'- --uGCUU-UCCgGCGugcGCGCCGCCgCCg -3' miRNA: 3'- uauCGAAuAGG-CGCua-UGCGGCGG-GG- -5' |
|||||||
| 9598 | 5' | -54.9 | NC_002577.1 | + | 11010 | 0.68 | 0.854704 |
|
Target: 5'- -aGGCgg--CCgggaaGCGAUcgcGCGCCGUCCCg -3' miRNA: 3'- uaUCGaauaGG-----CGCUA---UGCGGCGGGG- -5' |
|||||||
| 9598 | 5' | -54.9 | NC_002577.1 | + | 139949 | 0.68 | 0.869995 |
|
Target: 5'- uGUGGUUguuUUCuCGAUGCGCgCGCCUCg -3' miRNA: 3'- -UAUCGAau-AGGcGCUAUGCG-GCGGGG- -5' |
|||||||
| 9598 | 5' | -54.9 | NC_002577.1 | + | 11249 | 0.68 | 0.869995 |
|
Target: 5'- -cGGCccgcgCCGgGGgcuagaaACGCCGCCCCc -3' miRNA: 3'- uaUCGaaua-GGCgCUa------UGCGGCGGGG- -5' |
|||||||
| 9598 | 5' | -54.9 | NC_002577.1 | + | 135667 | 0.66 | 0.946971 |
|
Target: 5'- aAUAGgaccGUCUGCGAcguuUGCCGCUCCg -3' miRNA: 3'- -UAUCgaa-UAGGCGCUau--GCGGCGGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home