miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9598 5' -54.9 NC_002577.1 + 1143 0.69 0.830251
Target:  5'- --cGCUUGggaaCCGCGGaccgcagccuuUGCGUCGCCgCCg -3'
miRNA:   3'- uauCGAAUa---GGCGCU-----------AUGCGGCGG-GG- -5'
9598 5' -54.9 NC_002577.1 + 1332 0.7 0.795128
Target:  5'- -aGGCUgcgGUCCGCGGUucccaaGCGUccugCGUCCCc -3'
miRNA:   3'- uaUCGAa--UAGGCGCUA------UGCG----GCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 2854 0.66 0.946534
Target:  5'- -cAGCga--CCGCGAUuuccucuGCGCCuaCCCu -3'
miRNA:   3'- uaUCGaauaGGCGCUA-------UGCGGcgGGG- -5'
9598 5' -54.9 NC_002577.1 + 3359 0.69 0.846748
Target:  5'- -cGGaacg-CCGCGGgacgaaGCCGCCCCg -3'
miRNA:   3'- uaUCgaauaGGCGCUaug---CGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 4315 0.67 0.891296
Target:  5'- -cGGaugGUCCGUGGUACGgUGUCCUg -3'
miRNA:   3'- uaUCgaaUAGGCGCUAUGCgGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 4582 0.67 0.906848
Target:  5'- -gAGCgugUAacgauuUCCGCGGcgcgcgacgacgccGCGCCGUCCCg -3'
miRNA:   3'- uaUCGa--AU------AGGCGCUa-------------UGCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 8791 0.71 0.728276
Target:  5'- cUGGacgAUCCGCGAgcgacuuaugaUGCGCgUGCCCCu -3'
miRNA:   3'- uAUCgaaUAGGCGCU-----------AUGCG-GCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 10376 1.09 0.003719
Target:  5'- aAUAGCUUAUCCGCGAUACGCCGCCCCc -3'
miRNA:   3'- -UAUCGAAUAGGCGCUAUGCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 11010 0.68 0.854704
Target:  5'- -aGGCgg--CCgggaaGCGAUcgcGCGCCGUCCCg -3'
miRNA:   3'- uaUCGaauaGG-----CGCUA---UGCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 11249 0.68 0.869995
Target:  5'- -cGGCccgcgCCGgGGgcuagaaACGCCGCCCCc -3'
miRNA:   3'- uaUCGaaua-GGCgCUa------UGCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 17350 0.67 0.897941
Target:  5'- gAUAGUUcggCCGCGAUuaaaaaGCGUCGCCggCCg -3'
miRNA:   3'- -UAUCGAauaGGCGCUA------UGCGGCGG--GG- -5'
9598 5' -54.9 NC_002577.1 + 17547 0.66 0.932801
Target:  5'- uUGGCUgcUCCcCGAauUAUGCUGUCCUa -3'
miRNA:   3'- uAUCGAauAGGcGCU--AUGCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 21002 0.68 0.869996
Target:  5'- --cGCUcUAUCCG-GAgguUGCCGUCCCg -3'
miRNA:   3'- uauCGA-AUAGGCgCUau-GCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 36493 0.66 0.942488
Target:  5'- --cGCg---UUGCGAUGCGCCGCgCa -3'
miRNA:   3'- uauCGaauaGGCGCUAUGCGGCGgGg -5'
9598 5' -54.9 NC_002577.1 + 41752 0.66 0.946971
Target:  5'- --cGCUUcuguugggCCGCGAcACGUgGCCUCg -3'
miRNA:   3'- uauCGAAua------GGCGCUaUGCGgCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 43161 0.73 0.614016
Target:  5'- -gAGCUUGUCCGCGuaagagaauuuuUGCGaaGCCCa -3'
miRNA:   3'- uaUCGAAUAGGCGCu-----------AUGCggCGGGg -5'
9598 5' -54.9 NC_002577.1 + 62082 0.68 0.862455
Target:  5'- aGUAGuCUUcagCGCGucuUGCGCCGCCUCc -3'
miRNA:   3'- -UAUC-GAAuagGCGCu--AUGCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 78711 0.67 0.912925
Target:  5'- cUAGCUUGUCUGauauuuuuuuucuucCGggGCaaGUCGCCCCu -3'
miRNA:   3'- uAUCGAAUAGGC---------------GCuaUG--CGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 104801 0.66 0.946971
Target:  5'- -cAGCUUGga-GCG-UGCGCCGUCUg -3'
miRNA:   3'- uaUCGAAUaggCGCuAUGCGGCGGGg -5'
9598 5' -54.9 NC_002577.1 + 106708 0.67 0.910523
Target:  5'- cUAGCgaaGUCCuaGAUGCGgCGUCCg -3'
miRNA:   3'- uAUCGaa-UAGGcgCUAUGCgGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.