miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9598 5' -54.9 NC_002577.1 + 161674 0.69 0.830251
Target:  5'- -aGGCc-GUCUGCGAcguuUGCCGCUCCg -3'
miRNA:   3'- uaUCGaaUAGGCGCUau--GCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 159369 0.7 0.798757
Target:  5'- -gAGCUUG-CCGUGGUGCGCCcaguucaggggguucGCCUUc -3'
miRNA:   3'- uaUCGAAUaGGCGCUAUGCGG---------------CGGGG- -5'
9598 5' -54.9 NC_002577.1 + 159066 0.71 0.72629
Target:  5'- gAUGGCgcccgccggCCGCGGccGCGCCGUCCUc -3'
miRNA:   3'- -UAUCGaaua-----GGCGCUa-UGCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 157789 0.69 0.846748
Target:  5'- --uGCUU-UCCgGCGugcGCGCCGCCgCCg -3'
miRNA:   3'- uauCGAAuAGG-CGCua-UGCGGCGG-GG- -5'
9598 5' -54.9 NC_002577.1 + 157389 0.68 0.869996
Target:  5'- uGUGGUUguuUUCuCGAUGCGCgCGCCUCg -3'
miRNA:   3'- -UAUCGAau-AGGcGCUAUGCG-GCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 157296 0.68 0.884422
Target:  5'- aAUGGCgu-UgCGCGAaaggucgccCGCUGCCCCa -3'
miRNA:   3'- -UAUCGaauAgGCGCUau-------GCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 143164 0.68 0.877319
Target:  5'- -cAGCUUGcgagucguUCCGCGcUGggugcucgcCGCaCGCCCCg -3'
miRNA:   3'- uaUCGAAU--------AGGCGCuAU---------GCG-GCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 140042 0.68 0.884421
Target:  5'- aAUGGCgu-UgCGCGAaaggucgccCGCUGCCCCa -3'
miRNA:   3'- -UAUCGaauAgGCGCUau-------GCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 139949 0.68 0.869995
Target:  5'- uGUGGUUguuUUCuCGAUGCGCgCGCCUCg -3'
miRNA:   3'- -UAUCGAau-AGGcGCUAUGCG-GCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 139548 0.69 0.846748
Target:  5'- --uGCUU-UCCgGCGugcGCGCCGCCgCCg -3'
miRNA:   3'- uauCGAAuAGG-CGCua-UGCGGCGG-GG- -5'
9598 5' -54.9 NC_002577.1 + 138272 0.71 0.72629
Target:  5'- gAUGGCgcccgccggCCGCGGccGCGCCGUCCUc -3'
miRNA:   3'- -UAUCGaaua-----GGCGCUa-UGCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 137968 0.7 0.798757
Target:  5'- -gAGCUUG-CCGUGGUGCGCCcaguucaggggguucGCCUUc -3'
miRNA:   3'- uaUCGAAUaGGCGCUAUGCGG---------------CGGGG- -5'
9598 5' -54.9 NC_002577.1 + 135667 0.66 0.946971
Target:  5'- aAUAGgaccGUCUGCGAcguuUGCCGCUCCg -3'
miRNA:   3'- -UAUCgaa-UAGGCGCUau--GCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 132470 0.69 0.830251
Target:  5'- --cGCUUGggaaCCGCGGaccgcagccuuUGCGUCGCCgCCg -3'
miRNA:   3'- uauCGAAUa---GGCGCU-----------AUGCGGCGG-GG- -5'
9598 5' -54.9 NC_002577.1 + 132282 0.7 0.795128
Target:  5'- -aGGCUgcgGUCCGCGGUucccaaGCGUccugCGUCCCc -3'
miRNA:   3'- uaUCGAa--UAGGCGCUA------UGCG----GCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 130760 0.66 0.946534
Target:  5'- -cAGCga--CCGCGAUuuccucuGCGCCuaCCCu -3'
miRNA:   3'- uaUCGaauaGGCGCUA-------UGCGGcgGGG- -5'
9598 5' -54.9 NC_002577.1 + 130255 0.69 0.846748
Target:  5'- -cGGaacg-CCGCGGgacgaaGCCGCCCCg -3'
miRNA:   3'- uaUCgaauaGGCGCUaug---CGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 129299 0.67 0.891297
Target:  5'- -cGGaugGUCCGUGGUACGgUGUCCUg -3'
miRNA:   3'- uaUCgaaUAGGCGCUAUGCgGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 129032 0.67 0.906848
Target:  5'- -gAGCgugUAacgauuUCCGCGGcgcgcgacgacgccGCGCCGUCCCg -3'
miRNA:   3'- uaUCGa--AU------AGGCGCUa-------------UGCGGCGGGG- -5'
9598 5' -54.9 NC_002577.1 + 124823 0.71 0.728276
Target:  5'- cUGGacgAUCCGCGAgcgacuuaugaUGCGCgUGCCCCu -3'
miRNA:   3'- uAUCgaaUAGGCGCU-----------AUGCG-GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.