miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9600 3' -54.2 NC_002577.1 + 121938 0.66 0.967407
Target:  5'- cCUCCGgacGCCgagAgGGAUGCGgagcgcgaGAGCGGAg -3'
miRNA:   3'- -GAGGC---CGGa--UgUUUAUGCg-------CUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 87319 0.66 0.967407
Target:  5'- cCUCuaCGGCCgagAUAAGUucGCGCGAGCc-- -3'
miRNA:   3'- -GAG--GCCGGa--UGUUUA--UGCGCUCGccu -5'
9600 3' -54.2 NC_002577.1 + 11676 0.66 0.967407
Target:  5'- cCUCCGgacGCCgagAgGGAUGCGgagcgcgaGAGCGGAg -3'
miRNA:   3'- -GAGGC---CGGa--UgUUUAUGCg-------CUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 10158 0.66 0.953175
Target:  5'- --aCGGCCUcucgaACGAGaGCGgGGGUGGGg -3'
miRNA:   3'- gagGCCGGA-----UGUUUaUGCgCUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 140798 0.66 0.953175
Target:  5'- -gUgGGCUUACAgggcgcgucaGAUACGC-AGCGGAc -3'
miRNA:   3'- gaGgCCGGAUGU----------UUAUGCGcUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 123456 0.66 0.953175
Target:  5'- --aCGGCCUcucgaACGAGaGCGgGGGUGGGg -3'
miRNA:   3'- gagGCCGGA-----UGUUUaUGCgCUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 156539 0.66 0.953175
Target:  5'- -gUgGGCUUACAgggcgcgucaGAUACGC-AGCGGAc -3'
miRNA:   3'- gaGgCCGGAUGU----------UUAUGCGcUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 145140 0.66 0.949051
Target:  5'- aUCCGGCC-ACAGAUGagauguucUGCGAaguuuGCGGc -3'
miRNA:   3'- gAGGCCGGaUGUUUAU--------GCGCU-----CGCCu -5'
9600 3' -54.2 NC_002577.1 + 125566 0.67 0.940095
Target:  5'- gCUCCgGGCCggaGAGgcugGCGGGCGGGu -3'
miRNA:   3'- -GAGG-CCGGaugUUUaug-CGCUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 8047 0.67 0.940095
Target:  5'- gCUCCgGGCCggaGAGgcugGCGGGCGGGu -3'
miRNA:   3'- -GAGG-CCGGaugUUUaug-CGCUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 70628 0.67 0.940095
Target:  5'- -gCCGGagguaCUGCGcGAUGC-CGAGCGGGu -3'
miRNA:   3'- gaGGCCg----GAUGU-UUAUGcGCUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 9809 0.68 0.919306
Target:  5'- aUCCGGaaucCCgUGCAGGUACGCaccGCGGGc -3'
miRNA:   3'- gAGGCC----GG-AUGUUUAUGCGcu-CGCCU- -5'
9600 3' -54.2 NC_002577.1 + 123804 0.68 0.919306
Target:  5'- aUCCGGaaucCCgUGCAGGUACGCaccGCGGGc -3'
miRNA:   3'- gAGGCC----GG-AUGUUUAUGCGcu-CGCCU- -5'
9600 3' -54.2 NC_002577.1 + 21933 0.68 0.919306
Target:  5'- -aCCGGCCUccuucuucuAC-AGUACGCGGcguGCGGu -3'
miRNA:   3'- gaGGCCGGA---------UGuUUAUGCGCU---CGCCu -5'
9600 3' -54.2 NC_002577.1 + 31423 0.69 0.887931
Target:  5'- -gCCGGUCUGCAcagauuAAUugGaaaCGGGCGGGc -3'
miRNA:   3'- gaGGCCGGAUGU------UUAugC---GCUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 57649 0.69 0.866348
Target:  5'- uCUCUGGCCaagaagaACGAGgccgGCGCGGGCGc- -3'
miRNA:   3'- -GAGGCCGGa------UGUUUa---UGCGCUCGCcu -5'
9600 3' -54.2 NC_002577.1 + 10303 0.69 0.850887
Target:  5'- gUCUGGCCgGCucg-GCGCGAGcCGGc -3'
miRNA:   3'- gAGGCCGGaUGuuuaUGCGCUC-GCCu -5'
9600 3' -54.2 NC_002577.1 + 123311 0.69 0.850887
Target:  5'- gUCUGGCCgGCucg-GCGCGAGcCGGc -3'
miRNA:   3'- gAGGCCGGaUGuuuaUGCGCUC-GCCu -5'
9600 3' -54.2 NC_002577.1 + 9184 0.7 0.834624
Target:  5'- uUUCGGUgUcugGCGAugGCGCGGGCGGGg -3'
miRNA:   3'- gAGGCCGgA---UGUUuaUGCGCUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 153082 0.7 0.834624
Target:  5'- gCUCCGGguCUUACAc---CGCGAGCGGc -3'
miRNA:   3'- -GAGGCC--GGAUGUuuauGCGCUCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.