miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9600 3' -54.2 NC_002577.1 + 9184 0.7 0.834624
Target:  5'- uUUCGGUgUcugGCGAugGCGCGGGCGGGg -3'
miRNA:   3'- gAGGCCGgA---UGUUuaUGCGCUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 38341 0.71 0.799931
Target:  5'- -aUUGGCCU-Cug--GCGCGGGCGGAc -3'
miRNA:   3'- gaGGCCGGAuGuuuaUGCGCUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 67042 0.71 0.799931
Target:  5'- -aCCGGCgaGCAAAUAUGCGAuaaucuCGGAa -3'
miRNA:   3'- gaGGCCGgaUGUUUAUGCGCUc-----GCCU- -5'
9600 3' -54.2 NC_002577.1 + 7823 0.71 0.781631
Target:  5'- -cCCGGCgcuuCUGCGucUGCGCG-GCGGAc -3'
miRNA:   3'- gaGGCCG----GAUGUuuAUGCGCuCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 125791 0.71 0.781631
Target:  5'- -cCCGGCgcuuCUGCGucUGCGCG-GCGGAc -3'
miRNA:   3'- gaGGCCG----GAUGUuuAUGCGCuCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 136151 0.71 0.75992
Target:  5'- uCUCCGGUaggcagaggcgguugGCGAGUGCgGCGAGCaGGAa -3'
miRNA:   3'- -GAGGCCGga-------------UGUUUAUG-CGCUCG-CCU- -5'
9600 3' -54.2 NC_002577.1 + 161187 0.71 0.75992
Target:  5'- uCUCCGGUaggcagaggcgguugGCGAGUGCgGCGAGCaGGAa -3'
miRNA:   3'- -GAGGCCGga-------------UGUUUAUG-CGCUCG-CCU- -5'
9600 3' -54.2 NC_002577.1 + 122023 0.72 0.713798
Target:  5'- -aCCGGCCcgGCGGA-ACGCGAuGCGGc -3'
miRNA:   3'- gaGGCCGGa-UGUUUaUGCGCU-CGCCu -5'
9600 3' -54.2 NC_002577.1 + 11591 0.72 0.713798
Target:  5'- -aCCGGCCcgGCGGA-ACGCGAuGCGGc -3'
miRNA:   3'- gaGGCCGGa-UGUUUaUGCGCU-CGCCu -5'
9600 3' -54.2 NC_002577.1 + 33389 0.74 0.611656
Target:  5'- aUCC-GCCUcugACAAAUACGCGuGCGGu -3'
miRNA:   3'- gAGGcCGGA---UGUUUAUGCGCuCGCCu -5'
9600 3' -54.2 NC_002577.1 + 121918 0.74 0.591154
Target:  5'- -gCCGGCCUGCAGuu-CGggaaGAGCGGGg -3'
miRNA:   3'- gaGGCCGGAUGUUuauGCg---CUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 11695 0.74 0.591154
Target:  5'- -gCCGGCCUGCAGuu-CGggaaGAGCGGGg -3'
miRNA:   3'- gaGGCCGGAUGUUuauGCg---CUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 11192 1.09 0.004396
Target:  5'- cCUCCGGCCUACAAAUACGCGAGCGGAg -3'
miRNA:   3'- -GAGGCCGGAUGUUUAUGCGCUCGCCU- -5'
9600 3' -54.2 NC_002577.1 + 122422 1.09 0.004396
Target:  5'- cCUCCGGCCUACAAAUACGCGAGCGGAg -3'
miRNA:   3'- -GAGGCCGGAUGUUUAUGCGCUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.