miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9600 5' -64.4 NC_002577.1 + 163255 0.66 0.579584
Target:  5'- --cCCGCgcGGCCGGCggGCaUGUCCGGc -3'
miRNA:   3'- caaGGCGa-CCGGCCGggCG-GCAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 134073 0.66 0.579584
Target:  5'- --cCCGCgcGGCCGGCggGCaUGUCCGGc -3'
miRNA:   3'- caaGGCGa-CCGGCCGggCG-GCAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 11112 0.66 0.570082
Target:  5'- --aCCGC-GGUaauaaaGcGCCCGCCGUCgCGGa -3'
miRNA:   3'- caaGGCGaCCGg-----C-CGGGCGGCAG-GCU- -5'
9600 5' -64.4 NC_002577.1 + 122502 0.66 0.570082
Target:  5'- --aCCGC-GGUaauaaaGcGCCCGCCGUCgCGGa -3'
miRNA:   3'- caaGGCGaCCGg-----C-CGGGCGGCAG-GCU- -5'
9600 5' -64.4 NC_002577.1 + 9325 0.66 0.5512
Target:  5'- ---aCGCUaGGCUGGCCCggggcgcggacGCgGUCUGAg -3'
miRNA:   3'- caagGCGA-CCGGCCGGG-----------CGgCAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 124289 0.66 0.5512
Target:  5'- ---aCGCUaGGCUGGCCCggggcgcggacGCgGUCUGAg -3'
miRNA:   3'- caagGCGA-CCGGCCGGG-----------CGgCAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 140071 0.66 0.54183
Target:  5'- -cUCCGgaGGaCGGCUccgucgCGCCGUCgCGAg -3'
miRNA:   3'- caAGGCgaCCgGCCGG------GCGGCAG-GCU- -5'
9600 5' -64.4 NC_002577.1 + 38349 0.66 0.54183
Target:  5'- -aUUCGUcGcCCGGCCCGCCGggCGAc -3'
miRNA:   3'- caAGGCGaCcGGCCGGGCGGCagGCU- -5'
9600 5' -64.4 NC_002577.1 + 157267 0.66 0.541829
Target:  5'- -cUCCGgaGGaCGGCUccgucgCGCCGUCgCGAg -3'
miRNA:   3'- caAGGCgaCCgGCCGG------GCGGCAG-GCU- -5'
9600 5' -64.4 NC_002577.1 + 52370 0.66 0.529729
Target:  5'- -cUCCGUaUGGucgcugcuagacauCCGGagaCCGCCGUCCGu -3'
miRNA:   3'- caAGGCG-ACC--------------GGCCg--GGCGGCAGGCu -5'
9600 5' -64.4 NC_002577.1 + 47149 0.67 0.504928
Target:  5'- --cCCGUugacgaccaUGGCCGGaugCCGCUGUCCu- -3'
miRNA:   3'- caaGGCG---------ACCGGCCg--GGCGGCAGGcu -5'
9600 5' -64.4 NC_002577.1 + 121913 0.67 0.486885
Target:  5'- ----aGCcGGCCGGCCUGCaGUUCGGg -3'
miRNA:   3'- caaggCGaCCGGCCGGGCGgCAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 11700 0.67 0.486885
Target:  5'- ----aGCcGGCCGGCCUGCaGUUCGGg -3'
miRNA:   3'- caaggCGaCCGGCCGGGCGgCAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 138362 0.68 0.451756
Target:  5'- --cCCGCcGGCCGGCCggUGCUgGUUCGGg -3'
miRNA:   3'- caaGGCGaCCGGCCGG--GCGG-CAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 158975 0.68 0.451756
Target:  5'- --cCCGCcGGCCGGCCggUGCUgGUUCGGg -3'
miRNA:   3'- caaGGCGaCCGGCCGG--GCGG-CAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 10107 0.68 0.418059
Target:  5'- -cUCCGa-GGCCGGCUcgCGCCGagCCGGc -3'
miRNA:   3'- caAGGCgaCCGGCCGG--GCGGCa-GGCU- -5'
9600 5' -64.4 NC_002577.1 + 123506 0.68 0.418058
Target:  5'- -cUCCGa-GGCCGGCUcgCGCCGagCCGGc -3'
miRNA:   3'- caAGGCgaCCGGCCGG--GCGGCa-GGCU- -5'
9600 5' -64.4 NC_002577.1 + 78997 0.69 0.393813
Target:  5'- --cCCGC-GGCCGGUCUGuuGUUCGc -3'
miRNA:   3'- caaGGCGaCCGGCCGGGCggCAGGCu -5'
9600 5' -64.4 NC_002577.1 + 123045 0.7 0.340909
Target:  5'- uGUUCCGCgagcGGCguuCGGCCgCGUCG-CCGAc -3'
miRNA:   3'- -CAAGGCGa---CCG---GCCGG-GCGGCaGGCU- -5'
9600 5' -64.4 NC_002577.1 + 10569 0.7 0.340909
Target:  5'- uGUUCCGCgagcGGCguuCGGCCgCGUCG-CCGAc -3'
miRNA:   3'- -CAAGGCGa---CCG---GCCGG-GCGGCaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.