miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9602 5' -55.7 NC_002577.1 + 128505 0.66 0.94271
Target:  5'- uUCG-CGCGCgucGCCCu--GUCCGUCc -3'
miRNA:   3'- gAGCuGUGCGa--UGGGuauCGGGCAGc -5'
9602 5' -55.7 NC_002577.1 + 5108 0.66 0.94271
Target:  5'- uUCG-CGCGCgucGCCCu--GUCCGUCc -3'
miRNA:   3'- gAGCuGUGCGa--UGGGuauCGGGCAGc -5'
9602 5' -55.7 NC_002577.1 + 58609 0.66 0.928133
Target:  5'- aCUCG-CGCGUUGCCUGggacuuUAGCucuuCCGUCGu -3'
miRNA:   3'- -GAGCuGUGCGAUGGGU------AUCG----GGCAGC- -5'
9602 5' -55.7 NC_002577.1 + 85480 0.66 0.922806
Target:  5'- aUCGACGCaGCUguagcgACCCugcUGGgCCGUCu -3'
miRNA:   3'- gAGCUGUG-CGA------UGGGu--AUCgGGCAGc -5'
9602 5' -55.7 NC_002577.1 + 151962 0.66 0.922806
Target:  5'- --aGACAUuaUGCCaCGUAGCCCGg-- -3'
miRNA:   3'- gagCUGUGcgAUGG-GUAUCGGGCagc -5'
9602 5' -55.7 NC_002577.1 + 108170 0.67 0.899172
Target:  5'- cCUCG-CACGCgucggggGCuCCGUGGCgcaugcaguucuCCGUCGa -3'
miRNA:   3'- -GAGCuGUGCGa------UG-GGUAUCG------------GGCAGC- -5'
9602 5' -55.7 NC_002577.1 + 157314 0.67 0.89269
Target:  5'- gUCGcC-CGCUGCCCcaggAGCCgGUCu -3'
miRNA:   3'- gAGCuGuGCGAUGGGua--UCGGgCAGc -5'
9602 5' -55.7 NC_002577.1 + 140024 0.67 0.89269
Target:  5'- gUCGcC-CGCUGCCCcaggAGCCgGUCu -3'
miRNA:   3'- gAGCuGuGCGAUGGGua--UCGGgCAGc -5'
9602 5' -55.7 NC_002577.1 + 83134 0.68 0.849257
Target:  5'- --gGACGuguuCGCUuguCCAUAGCCCGUCu -3'
miRNA:   3'- gagCUGU----GCGAug-GGUAUCGGGCAGc -5'
9602 5' -55.7 NC_002577.1 + 96781 0.68 0.849257
Target:  5'- uUCGAcCugGUUAUUCGgacauacaugAGCCCGUCGa -3'
miRNA:   3'- gAGCU-GugCGAUGGGUa---------UCGGGCAGC- -5'
9602 5' -55.7 NC_002577.1 + 15546 0.68 0.849257
Target:  5'- gUCGACGgGCUAUggGUAGCgUGUCGa -3'
miRNA:   3'- gAGCUGUgCGAUGggUAUCGgGCAGC- -5'
9602 5' -55.7 NC_002577.1 + 136160 0.68 0.846893
Target:  5'- cCUgGACACGCUagaggaucgagaucGCCCGgagaacGGCCCG-CGc -3'
miRNA:   3'- -GAgCUGUGCGA--------------UGGGUa-----UCGGGCaGC- -5'
9602 5' -55.7 NC_002577.1 + 161178 0.68 0.846893
Target:  5'- cCUgGACACGCUagaggaucgagaucGCCCGgagaacGGCCCG-CGc -3'
miRNA:   3'- -GAgCUGUGCGA--------------UGGGUa-----UCGGGCaGC- -5'
9602 5' -55.7 NC_002577.1 + 58225 0.7 0.780881
Target:  5'- -cCGugGCGCUACCUAgcgaGGCCCuUCc -3'
miRNA:   3'- gaGCugUGCGAUGGGUa---UCGGGcAGc -5'
9602 5' -55.7 NC_002577.1 + 75072 0.7 0.780881
Target:  5'- uCUCGAUuCGUUAUCgAUAGCCC-UCGa -3'
miRNA:   3'- -GAGCUGuGCGAUGGgUAUCGGGcAGC- -5'
9602 5' -55.7 NC_002577.1 + 67051 0.7 0.762315
Target:  5'- gUUGAUcCGCUACCCAga-CCCGUUGu -3'
miRNA:   3'- gAGCUGuGCGAUGGGUaucGGGCAGC- -5'
9602 5' -55.7 NC_002577.1 + 53422 0.71 0.73267
Target:  5'- aUCGACGuuUUACCUauagccaAUGGCCCGUCGa -3'
miRNA:   3'- gAGCUGUgcGAUGGG-------UAUCGGGCAGC- -5'
9602 5' -55.7 NC_002577.1 + 130532 0.71 0.723898
Target:  5'- uCUCGACGC-CUACCCucggcguuGUUCGUCGg -3'
miRNA:   3'- -GAGCUGUGcGAUGGGuau-----CGGGCAGC- -5'
9602 5' -55.7 NC_002577.1 + 3082 0.71 0.723898
Target:  5'- uCUCGACGC-CUACCCucggcguuGUUCGUCGg -3'
miRNA:   3'- -GAGCUGUGcGAUGGGuau-----CGGGCAGC- -5'
9602 5' -55.7 NC_002577.1 + 4435 0.71 0.684243
Target:  5'- aCUCGGCGCGCgUACCCGcGGCCa-UCc -3'
miRNA:   3'- -GAGCUGUGCG-AUGGGUaUCGGgcAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.