miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9603 3' -60.2 NC_002577.1 + 159895 0.66 0.802557
Target:  5'- aAGCGUCcACCagcucguucagcGGcCGGGUaGACGCGa -3'
miRNA:   3'- cUCGCAGcUGG------------CCaGCCCAgCUGCGC- -5'
9603 3' -60.2 NC_002577.1 + 137443 0.66 0.802557
Target:  5'- aAGCGUCcACCagcucguucagcGGcCGGGUaGACGCGa -3'
miRNA:   3'- cUCGCAGcUGG------------CCaGCCCAgCUGCGC- -5'
9603 3' -60.2 NC_002577.1 + 121641 0.66 0.794023
Target:  5'- cGGGuCGUCGcCCGGgucgucgccCGGGUCcGCGCc -3'
miRNA:   3'- -CUC-GCAGCuGGCCa--------GCCCAGcUGCGc -5'
9603 3' -60.2 NC_002577.1 + 4547 0.66 0.785356
Target:  5'- cGGGgGUCGGCU-GUUGGGUaaGACGUGg -3'
miRNA:   3'- -CUCgCAGCUGGcCAGCCCAg-CUGCGC- -5'
9603 3' -60.2 NC_002577.1 + 129067 0.66 0.785356
Target:  5'- cGGGgGUCGGCU-GUUGGGUaaGACGUGg -3'
miRNA:   3'- -CUCgCAGCUGGcCAGCCCAg-CUGCGC- -5'
9603 3' -60.2 NC_002577.1 + 60221 0.66 0.776566
Target:  5'- cGGCGgCGGCCucGGgCGGGgCGACGCc -3'
miRNA:   3'- cUCGCaGCUGG--CCaGCCCaGCUGCGc -5'
9603 3' -60.2 NC_002577.1 + 7935 0.66 0.767658
Target:  5'- cGGCGUucCGGgCGGUCGGcgaGUCGGCGg- -3'
miRNA:   3'- cUCGCA--GCUgGCCAGCC---CAGCUGCgc -5'
9603 3' -60.2 NC_002577.1 + 94258 0.66 0.767658
Target:  5'- cGAGCGU-GGCCGGUCGucGUUGAUGa- -3'
miRNA:   3'- -CUCGCAgCUGGCCAGCc-CAGCUGCgc -5'
9603 3' -60.2 NC_002577.1 + 125679 0.66 0.767658
Target:  5'- cGGCGUucCGGgCGGUCGGcgaGUCGGCGg- -3'
miRNA:   3'- cUCGCA--GCUgGCCAGCC---CAGCUGCgc -5'
9603 3' -60.2 NC_002577.1 + 163261 0.67 0.749525
Target:  5'- cGAGCGcccgcgCGGCCGG-CGGGcaugucCGGCGgGg -3'
miRNA:   3'- -CUCGCa-----GCUGGCCaGCCCa-----GCUGCgC- -5'
9603 3' -60.2 NC_002577.1 + 134067 0.67 0.749525
Target:  5'- cGAGCGcccgcgCGGCCGG-CGGGcaugucCGGCGgGg -3'
miRNA:   3'- -CUCGCa-----GCUGGCCaGCCCa-----GCUGCgC- -5'
9603 3' -60.2 NC_002577.1 + 74992 0.67 0.734747
Target:  5'- cGAGCaGUUuugauguucuggccgGAUCGGUCGGGcCGACGa- -3'
miRNA:   3'- -CUCG-CAG---------------CUGGCCAGCCCaGCUGCgc -5'
9603 3' -60.2 NC_002577.1 + 11985 0.67 0.731019
Target:  5'- -cGCGUCGucgcCCGGgucgucgccCGGGUCGuCGCc -3'
miRNA:   3'- cuCGCAGCu---GGCCa--------GCCCAGCuGCGc -5'
9603 3' -60.2 NC_002577.1 + 155811 0.68 0.654531
Target:  5'- cGGCGUCGcCaCGGUUGGacCGGCGCGc -3'
miRNA:   3'- cUCGCAGCuG-GCCAGCCcaGCUGCGC- -5'
9603 3' -60.2 NC_002577.1 + 141526 0.68 0.654531
Target:  5'- cGGCGUCGcCaCGGUUGGacCGGCGCGc -3'
miRNA:   3'- cUCGCAGCuG-GCCAGCCcaGCUGCGC- -5'
9603 3' -60.2 NC_002577.1 + 101147 0.69 0.635098
Target:  5'- uGGGCGUgGACCGGUCGGuGccuccaaaaGGCGUu -3'
miRNA:   3'- -CUCGCAgCUGGCCAGCC-Cag-------CUGCGc -5'
9603 3' -60.2 NC_002577.1 + 11797 0.69 0.60595
Target:  5'- cGGGCGaCGAcCCGGgcgacgacgCGGGcgaCGACGCGg -3'
miRNA:   3'- -CUCGCaGCU-GGCCa--------GCCCa--GCUGCGC- -5'
9603 3' -60.2 NC_002577.1 + 10576 0.7 0.586594
Target:  5'- cGAGCGgcguUCGGCCGcGUCGc--CGACGCGg -3'
miRNA:   3'- -CUCGC----AGCUGGC-CAGCccaGCUGCGC- -5'
9603 3' -60.2 NC_002577.1 + 123038 0.7 0.586594
Target:  5'- cGAGCGgcguUCGGCCGcGUCGc--CGACGCGg -3'
miRNA:   3'- -CUCGC----AGCUGGC-CAGCccaGCUGCGC- -5'
9603 3' -60.2 NC_002577.1 + 109390 0.71 0.520074
Target:  5'- aGAGUGU--GCCGGcuUCGGGUCGA-GCGg -3'
miRNA:   3'- -CUCGCAgcUGGCC--AGCCCAGCUgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.