miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9604 5' -57.7 NC_002577.1 + 1161 0.67 0.783128
Target:  5'- -aCgGGggGGGGgGGGGUuGAGGGGGg -3'
miRNA:   3'- gaGgCCuaUCUCgCCUCGuCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 1627 0.76 0.314756
Target:  5'- aCUCgGGggGGGGgGGGGgGGAGGGGGg -3'
miRNA:   3'- -GAGgCCuaUCUCgCCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 6219 0.67 0.783128
Target:  5'- ---gGGAgGGAGUGGGGaGGGGGGGGg -3'
miRNA:   3'- gaggCCUaUCUCGCCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 7331 0.68 0.773983
Target:  5'- ---gGGggGGAGgGGGGgGGGGGGGGg -3'
miRNA:   3'- gaggCCuaUCUCgCCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 8508 0.7 0.626943
Target:  5'- aCUCCGugucGAU--GGCGGGGgGGGGGGGGg -3'
miRNA:   3'- -GAGGC----CUAucUCGCCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 9177 0.66 0.873305
Target:  5'- gUCUGGcgAuGGCGcGGGCGG-GGGAGu -3'
miRNA:   3'- gAGGCCuaUcUCGC-CUCGUCuCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 9512 0.71 0.576755
Target:  5'- -cUUGGggGGGGgGGGGgGGAGGGAGg -3'
miRNA:   3'- gaGGCCuaUCUCgCCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 10246 0.67 0.826717
Target:  5'- -gCUGGGcaacgAGAuaGGAGUAGAGGGAu -3'
miRNA:   3'- gaGGCCUa----UCUcgCCUCGUCUCCCUc -5'
9604 5' -57.7 NC_002577.1 + 11695 0.76 0.335842
Target:  5'- aUgCGGAgcgcgAGAGCGGAGCcggggacGGAGGGGGc -3'
miRNA:   3'- gAgGCCUa----UCUCGCCUCG-------UCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 11755 0.67 0.801016
Target:  5'- -gUCGGAcgGGAGaagaaGGGGgAGGGGGGGa -3'
miRNA:   3'- gaGGCCUa-UCUCg----CCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 21024 0.71 0.556901
Target:  5'- -cCCGGAUAGAGCaGcGCAGAGGu-- -3'
miRNA:   3'- gaGGCCUAUCUCGcCuCGUCUCCcuc -5'
9604 5' -57.7 NC_002577.1 + 21180 1.08 0.00251
Target:  5'- cCUCCGGAUAGAGCGGAGCAGAGGGAGu -3'
miRNA:   3'- -GAGGCCUAUCUCGCCUCGUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 72070 0.67 0.792142
Target:  5'- aUCU--GUAGGGCGuAGCGGAGGGAu -3'
miRNA:   3'- gAGGccUAUCUCGCcUCGUCUCCCUc -5'
9604 5' -57.7 NC_002577.1 + 81152 0.66 0.843006
Target:  5'- cCUgCGGGUAGAuCGGccauuauucccGUAGAGGGAGu -3'
miRNA:   3'- -GAgGCCUAUCUcGCCu----------CGUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 121858 0.67 0.801016
Target:  5'- -gUCGGAcgGGAGaagaaGGGGgAGGGGGGGa -3'
miRNA:   3'- gaGGCCUa-UCUCg----CCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 121919 0.76 0.335842
Target:  5'- aUgCGGAgcgcgAGAGCGGAGCcggggacGGAGGGGGc -3'
miRNA:   3'- gAgGCCUa----UCUCGCCUCG-------UCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 123368 0.67 0.826717
Target:  5'- -gCUGGGcaacgAGAuaGGAGUAGAGGGAu -3'
miRNA:   3'- gaGGCCUa----UCUcgCCUCGUCUCCCUc -5'
9604 5' -57.7 NC_002577.1 + 124102 0.71 0.576755
Target:  5'- -cUUGGggGGGGgGGGGgGGAGGGAGg -3'
miRNA:   3'- gaGGCCuaUCUCgCCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 124437 0.66 0.873305
Target:  5'- gUCUGGcgAuGGCGcGGGCGG-GGGAGu -3'
miRNA:   3'- gAGGCCuaUcUCGC-CUCGUCuCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 125106 0.7 0.626943
Target:  5'- aCUCCGugucGAU--GGCGGGGgGGGGGGGGg -3'
miRNA:   3'- -GAGGC----CUAucUCGCCUCgUCUCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.