miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9604 5' -57.7 NC_002577.1 + 164246 0.68 0.745845
Target:  5'- uUuuGGggGGGGgGGugaaauGCAGGGGGGGa -3'
miRNA:   3'- gAggCCuaUCUCgCCu-----CGUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 162961 0.69 0.716837
Target:  5'- -cCUGGGUcucGGGGgGGGGgGGGGGGGGc -3'
miRNA:   3'- gaGGCCUA---UCUCgCCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 162755 0.67 0.801016
Target:  5'- --aCGGAUAGAaccgcucaaucGgGGGGgGGGGGGGGg -3'
miRNA:   3'- gagGCCUAUCU-----------CgCCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 162639 0.68 0.726588
Target:  5'- uUUCGGAgaaggUAGGGCGGAGUucuGAGGcuuGAGg -3'
miRNA:   3'- gAGGCCU-----AUCUCGCCUCGu--CUCC---CUC- -5'
9604 5' -57.7 NC_002577.1 + 162481 0.7 0.637022
Target:  5'- aUCCGGA-GGAGCGGuuuccGCAGcccuAGGGAu -3'
miRNA:   3'- gAGGCCUaUCUCGCCu----CGUC----UCCCUc -5'
9604 5' -57.7 NC_002577.1 + 159258 0.66 0.843006
Target:  5'- -aCCGGGaGGGGaccgGGAGUAGAGaGGAa -3'
miRNA:   3'- gaGGCCUaUCUCg---CCUCGUCUC-CCUc -5'
9604 5' -57.7 NC_002577.1 + 158319 0.68 0.754388
Target:  5'- -gCgGGAgGGAGCGcgguggcGGGCGGGGGGGGc -3'
miRNA:   3'- gaGgCCUaUCUCGC-------CUCGUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 157050 0.78 0.255756
Target:  5'- gCUCCGGAggGGAGCGGgugcgaGGCGGGGGGc- -3'
miRNA:   3'- -GAGGCCUa-UCUCGCC------UCGUCUCCCuc -5'
9604 5' -57.7 NC_002577.1 + 156833 0.68 0.755332
Target:  5'- --gUGGggGGAGgGGAaccguGCGGAGGGGGg -3'
miRNA:   3'- gagGCCuaUCUCgCCU-----CGUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 156610 0.68 0.764715
Target:  5'- ---gGGGUGGGG-GGGGCAcgcccGAGGGAGg -3'
miRNA:   3'- gaggCCUAUCUCgCCUCGU-----CUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 154851 0.7 0.626943
Target:  5'- -aUCGGggGGGGgGGGGgGGGGGGGGc -3'
miRNA:   3'- gaGGCCuaUCUCgCCUCgUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 143927 0.7 0.626943
Target:  5'- -aCCGGAcaugAGAaacgaugcGCGGAGCAaucGGGGGGGg -3'
miRNA:   3'- gaGGCCUa---UCU--------CGCCUCGU---CUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 140727 0.68 0.764715
Target:  5'- ---gGGGUGGGG-GGGGCAcgcccGAGGGAGg -3'
miRNA:   3'- gaggCCUAUCUCgCCUCGU-----CUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 140505 0.68 0.755332
Target:  5'- --gUGGggGGAGgGGAaccguGCGGAGGGGGg -3'
miRNA:   3'- gagGCCuaUCUCgCCU-----CGUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 140288 0.78 0.255756
Target:  5'- gCUCCGGAggGGAGCGGgugcgaGGCGGGGGGc- -3'
miRNA:   3'- -GAGGCCUa-UCUCGCC------UCGUCUCCCuc -5'
9604 5' -57.7 NC_002577.1 + 139018 0.68 0.754388
Target:  5'- -gCgGGAgGGAGCGcgguggcGGGCGGGGGGGGc -3'
miRNA:   3'- gaGgCCUaUCUCGC-------CUCGUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 138080 0.66 0.843006
Target:  5'- -aCCGGGaGGGGaccgGGAGUAGAGaGGAa -3'
miRNA:   3'- gaGGCCUaUCUCg---CCUCGUCUC-CCUc -5'
9604 5' -57.7 NC_002577.1 + 135370 0.73 0.479917
Target:  5'- -gUCGG--GGGGgGGGGCGGGGGGAGu -3'
miRNA:   3'- gaGGCCuaUCUCgCCUCGUCUCCCUC- -5'
9604 5' -57.7 NC_002577.1 + 134847 0.7 0.637022
Target:  5'- aUCCGGA-GGAGCGGuuuccGCAGcccuAGGGAu -3'
miRNA:   3'- gAGGCCUaUCUCGCCu----CGUC----UCCCUc -5'
9604 5' -57.7 NC_002577.1 + 134689 0.7 0.657158
Target:  5'- uUUCGGAgaaggUAGGGCGGAGUucugaggcuuGAGGGAc -3'
miRNA:   3'- gAGGCCU-----AUCUCGCCUCGu---------CUCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.