miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9605 5' -52.3 NC_002577.1 + 1313 0.73 0.764275
Target:  5'- -gGCUCGCGCGcGAGCGcAUGCg-CGCa -3'
miRNA:   3'- aaUGGGCGUGC-CUCGCuUAUGaaGCG- -5'
9605 5' -52.3 NC_002577.1 + 4077 0.67 0.966613
Target:  5'- cUGCCCGCGgGGAaaugGCGGuguguguaAUGCUUCu- -3'
miRNA:   3'- aAUGGGCGUgCCU----CGCU--------UAUGAAGcg -5'
9605 5' -52.3 NC_002577.1 + 8237 0.69 0.935248
Target:  5'- -cGCCCGCcagccucuccggccCGGAGCGGAaACgcCGCg -3'
miRNA:   3'- aaUGGGCGu-------------GCCUCGCUUaUGaaGCG- -5'
9605 5' -52.3 NC_002577.1 + 11889 0.67 0.963264
Target:  5'- -gACCCggGCGCGGAcGCGGAcgagGCgcacgCGCg -3'
miRNA:   3'- aaUGGG--CGUGCCU-CGCUUa---UGaa---GCG- -5'
9605 5' -52.3 NC_002577.1 + 17848 0.67 0.972652
Target:  5'- -gACgUCGgGCGGAGCGcAGUACUUaguccaCGCg -3'
miRNA:   3'- aaUG-GGCgUGCCUCGC-UUAUGAA------GCG- -5'
9605 5' -52.3 NC_002577.1 + 20829 0.71 0.837225
Target:  5'- -aGCauGCGCGGAG-GAAUGCUaUCGCu -3'
miRNA:   3'- aaUGggCGUGCCUCgCUUAUGA-AGCG- -5'
9605 5' -52.3 NC_002577.1 + 24921 1.11 0.005236
Target:  5'- gUUACCCGCACGGAGCGAAUACUUCGCg -3'
miRNA:   3'- -AAUGGGCGUGCCUCGCUUAUGAAGCG- -5'
9605 5' -52.3 NC_002577.1 + 28941 0.67 0.963264
Target:  5'- -gGCCCG-AUGGAGggcUGggUACcgUCGCa -3'
miRNA:   3'- aaUGGGCgUGCCUC---GCuuAUGa-AGCG- -5'
9605 5' -52.3 NC_002577.1 + 38360 0.68 0.951834
Target:  5'- -gGCCCGC-CGG-GCGAcaaAUGCgcUGCg -3'
miRNA:   3'- aaUGGGCGuGCCuCGCU---UAUGaaGCG- -5'
9605 5' -52.3 NC_002577.1 + 38388 0.66 0.984246
Target:  5'- gUUGCCCGCGgGGuucauguuagcAGCGcAUGCcggCGCc -3'
miRNA:   3'- -AAUGGGCGUgCC-----------UCGCuUAUGaa-GCG- -5'
9605 5' -52.3 NC_002577.1 + 49631 0.66 0.98017
Target:  5'- aUGCCCGUcUGaGAGagggaGggUGCUUgGCa -3'
miRNA:   3'- aAUGGGCGuGC-CUCg----CuuAUGAAgCG- -5'
9605 5' -52.3 NC_002577.1 + 71751 0.69 0.910581
Target:  5'- -gACCCGCGauUGGGGCGAA-ACgaUCGUg -3'
miRNA:   3'- aaUGGGCGU--GCCUCGCUUaUGa-AGCG- -5'
9605 5' -52.3 NC_002577.1 + 78105 0.67 0.975356
Target:  5'- -aGCCCGCGgGGAcGC---UGCUUCGa -3'
miRNA:   3'- aaUGGGCGUgCCU-CGcuuAUGAAGCg -5'
9605 5' -52.3 NC_002577.1 + 79775 0.66 0.982296
Target:  5'- --gUCCGaugacuauauaCGCGGAGCGGAUcgauGCUcUCGCg -3'
miRNA:   3'- aauGGGC-----------GUGCCUCGCUUA----UGA-AGCG- -5'
9605 5' -52.3 NC_002577.1 + 101517 0.78 0.517561
Target:  5'- -gACCCGCACaGAuGCGGAgcCUUCGCc -3'
miRNA:   3'- aaUGGGCGUGcCU-CGCUUauGAAGCG- -5'
9605 5' -52.3 NC_002577.1 + 103070 0.68 0.95588
Target:  5'- aUACCCGCuCGGAgGCG-GUACUa-GCu -3'
miRNA:   3'- aAUGGGCGuGCCU-CGCuUAUGAagCG- -5'
9605 5' -52.3 NC_002577.1 + 103161 0.68 0.95588
Target:  5'- -gACCgguaaaaaaaagCGCACGGAGCGGcGUGCagaUCGUg -3'
miRNA:   3'- aaUGG------------GCGUGCCUCGCU-UAUGa--AGCG- -5'
9605 5' -52.3 NC_002577.1 + 109171 0.71 0.861589
Target:  5'- ---gUCGCuCGGAGCGAAUAUaUCGUa -3'
miRNA:   3'- aaugGGCGuGCCUCGCUUAUGaAGCG- -5'
9605 5' -52.3 NC_002577.1 + 118212 0.66 0.985857
Target:  5'- aUACCCGCGCGcGAaaaacgcauugugGCG-AUACUg-GCg -3'
miRNA:   3'- aAUGGGCGUGC-CU-------------CGCuUAUGAagCG- -5'
9605 5' -52.3 NC_002577.1 + 121809 0.67 0.963264
Target:  5'- -gACCCggGCGCGGAcGCGGAcgagGCgcacgCGCg -3'
miRNA:   3'- aaUGGG--CGUGCCU-CGCUUa---UGaa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.