Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 1313 | 0.73 | 0.764275 |
Target: 5'- -gGCUCGCGCGcGAGCGcAUGCg-CGCa -3' miRNA: 3'- aaUGGGCGUGC-CUCGCuUAUGaaGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 129537 | 0.67 | 0.966613 |
Target: 5'- cUGCCCGCGgGGAaaugGCGGuguguguaAUGCUUCu- -3' miRNA: 3'- aAUGGGCGUgCCU----CGCU--------UAUGAAGcg -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 103070 | 0.68 | 0.95588 |
Target: 5'- aUACCCGCuCGGAgGCG-GUACUa-GCu -3' miRNA: 3'- aAUGGGCGuGCCU-CGCuUAUGAagCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 163072 | 0.68 | 0.951834 |
Target: 5'- aUGCCCGC-CGGccgcGCGGGcGCU-CGCu -3' miRNA: 3'- aAUGGGCGuGCCu---CGCUUaUGAaGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 125377 | 0.69 | 0.935248 |
Target: 5'- -cGCCCGCcagccucuccggccCGGAGCGGAaACgcCGCg -3' miRNA: 3'- aaUGGGCGu-------------GCCUCGCUUaUGaaGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 136904 | 0.69 | 0.927926 |
Target: 5'- -gGCCCGCACGGGcucGgGAGaACUU-GCg -3' miRNA: 3'- aaUGGGCGUGCCU---CgCUUaUGAAgCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 136432 | 0.66 | 0.977859 |
Target: 5'- gUGCUCGcCACGcGAGCGAu--CUcCGCc -3' miRNA: 3'- aAUGGGC-GUGC-CUCGCUuauGAaGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 158813 | 0.67 | 0.963264 |
Target: 5'- -gACCCGCGaggcaGGAGCGccucAAUGCgcUGCc -3' miRNA: 3'- aaUGGGCGUg----CCUCGC----UUAUGaaGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 38360 | 0.68 | 0.951834 |
Target: 5'- -gGCCCGC-CGG-GCGAcaaAUGCgcUGCg -3' miRNA: 3'- aaUGGGCGuGCCuCGCU---UAUGaaGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 139348 | 0.69 | 0.916613 |
Target: 5'- gUACCCGCGCccGGCGGcgGCg-CGCa -3' miRNA: 3'- aAUGGGCGUGccUCGCUuaUGaaGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 134417 | 0.7 | 0.876756 |
Target: 5'- -gACCUuCACGGAGCGGA-GCUcgUUGCa -3' miRNA: 3'- aaUGGGcGUGCCUCGCUUaUGA--AGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 49631 | 0.66 | 0.98017 |
Target: 5'- aUGCCCGUcUGaGAGagggaGggUGCUUgGCa -3' miRNA: 3'- aAUGGGCGuGC-CUCg----CuuAUGAAgCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 134071 | 0.7 | 0.906843 |
Target: 5'- -cGCCCGCGCGGccggcgggcauguccGGCGGggAUGCagCGUg -3' miRNA: 3'- aaUGGGCGUGCC---------------UCGCU--UAUGaaGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 11889 | 0.67 | 0.963264 |
Target: 5'- -gACCCggGCGCGGAcGCGGAcgagGCgcacgCGCg -3' miRNA: 3'- aaUGGG--CGUGCCU-CGCUUa---UGaa---GCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 134126 | 0.66 | 0.982296 |
Target: 5'- cUGgCCGCGCGGAGCcgccgGCggUCGg -3' miRNA: 3'- aAUgGGCGUGCCUCGcuua-UGa-AGCg -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 156037 | 0.67 | 0.96974 |
Target: 5'- cUGCCCGCGCGGcucccgucGCGGGcagccuUGCcggCGCa -3' miRNA: 3'- aAUGGGCGUGCCu-------CGCUU------AUGaa-GCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 134256 | 0.68 | 0.951834 |
Target: 5'- aUGCCCGC-CGGccgcGCGGGcGCU-CGCu -3' miRNA: 3'- aAUGGGCGuGCCu---CGCUUaUGAaGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 103161 | 0.68 | 0.95588 |
Target: 5'- -gACCgguaaaaaaaagCGCACGGAGCGGcGUGCagaUCGUg -3' miRNA: 3'- aaUGG------------GCGUGCCUCGCU-UAUGa--AGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 138524 | 0.67 | 0.963264 |
Target: 5'- -gACCCGCGaggcaGGAGCGccucAAUGCgcUGCc -3' miRNA: 3'- aaUGGGCGUg----CCUCGC----UUAUGaaGCG- -5' |
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9605 | 5' | -52.3 | NC_002577.1 | + | 121809 | 0.67 | 0.963264 |
Target: 5'- -gACCCggGCGCGGAcGCGGAcgagGCgcacgCGCg -3' miRNA: 3'- aaUGGG--CGUGCCU-CGCUUa---UGaa---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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