Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9610 | 3' | -49.8 | NC_002577.1 | + | 109234 | 0.66 | 0.998616 |
Target: 5'- -aUCCGcacAUGCauaUCGCuGcUGUAUCGCg -3' miRNA: 3'- caAGGCuu-UGCG---AGCGuC-ACAUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 11847 | 0.66 | 0.998616 |
Target: 5'- -gUCCGGAgggGCGCgcggaucaGCGGUcggGUCGCg -3' miRNA: 3'- caAGGCUU---UGCGag------CGUCAca-UAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 121766 | 0.66 | 0.998616 |
Target: 5'- -gUCCGGAgggGCGCgcggaucaGCGGUcggGUCGCg -3' miRNA: 3'- caAGGCUU---UGCGag------CGUCAca-UAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 13922 | 0.66 | 0.998332 |
Target: 5'- uUUCCGAAcCGUcuucCGCAGg--GUCGCc -3' miRNA: 3'- cAAGGCUUuGCGa---GCGUCacaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 137153 | 0.66 | 0.998332 |
Target: 5'- cUUCCGGAACGUcCGaGGgccgGUCGCg -3' miRNA: 3'- cAAGGCUUUGCGaGCgUCaca-UAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 160185 | 0.66 | 0.998332 |
Target: 5'- cUUCCGGAACGUcCGaGGgccgGUCGCg -3' miRNA: 3'- cAAGGCUUUGCGaGCgUCaca-UAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 109648 | 0.66 | 0.998 |
Target: 5'- -gUCCaGAACGCagCGUGGUGU-UCGUg -3' miRNA: 3'- caAGGcUUUGCGa-GCGUCACAuAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 3326 | 0.66 | 0.997168 |
Target: 5'- -aUCCGGAgaGCGCgUCGCAc---GUCGCg -3' miRNA: 3'- caAGGCUU--UGCG-AGCGUcacaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 79705 | 0.66 | 0.997168 |
Target: 5'- -aUCCGAAcuaGCGCUUGCcGaa-GUCGCu -3' miRNA: 3'- caAGGCUU---UGCGAGCGuCacaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 130288 | 0.66 | 0.997168 |
Target: 5'- -aUCCGGAgaGCGCgUCGCAc---GUCGCg -3' miRNA: 3'- caAGGCUU--UGCG-AGCGUcacaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 38090 | 0.67 | 0.996655 |
Target: 5'- cGggCCGAAuCGCgucuaGCuGUGUugGUCGCa -3' miRNA: 3'- -CaaGGCUUuGCGag---CGuCACA--UAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 26429 | 0.67 | 0.996655 |
Target: 5'- --aCCGcAAGCGaCUCGUAGUGUuucuaaaGCg -3' miRNA: 3'- caaGGC-UUUGC-GAGCGUCACAuag----CG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 117646 | 0.67 | 0.995398 |
Target: 5'- --gCCGAAAaaauCGCaUCGCAGUGcagagcuauUCGCg -3' miRNA: 3'- caaGGCUUU----GCG-AGCGUCACau-------AGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 52276 | 0.67 | 0.994639 |
Target: 5'- aUUCCGAuuACGCggCGuCGGUcguugccucugcGUAUCGCu -3' miRNA: 3'- cAAGGCUu-UGCGa-GC-GUCA------------CAUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 3362 | 0.67 | 0.994475 |
Target: 5'- -aUCCGGAACGC-CGCGGgacgaagcCGCc -3' miRNA: 3'- caAGGCUUUGCGaGCGUCacaua---GCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 130252 | 0.67 | 0.994475 |
Target: 5'- -aUCCGGAACGC-CGCGGgacgaagcCGCc -3' miRNA: 3'- caAGGCUUUGCGaGCGUCacaua---GCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 135105 | 0.67 | 0.993781 |
Target: 5'- -gUCCGucucccCGCUCGCGGaUGauaUGUCGUa -3' miRNA: 3'- caAGGCuuu---GCGAGCGUC-AC---AUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 162223 | 0.67 | 0.993781 |
Target: 5'- -gUCCGucucccCGCUCGCGGaUGauaUGUCGUa -3' miRNA: 3'- caAGGCuuu---GCGAGCGUC-AC---AUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 3136 | 0.68 | 0.992817 |
Target: 5'- ---gCGAAGCGUUCuGCGGg--AUCGCg -3' miRNA: 3'- caagGCUUUGCGAG-CGUCacaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 91823 | 0.68 | 0.992817 |
Target: 5'- --aCCGGAACGagauuUCGCAGUcGgaacAUCGCu -3' miRNA: 3'- caaGGCUUUGCg----AGCGUCA-Ca---UAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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