miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9612 3' -50.3 NC_002577.1 + 73175 0.66 0.996317
Target:  5'- cCGUCCUcuuuuccccGCCGAaCGGCCuugaUUUGCACg -3'
miRNA:   3'- -GUAGGA---------CGGCUaGUUGGcg--AAAUGUG- -5'
9612 3' -50.3 NC_002577.1 + 77277 0.66 0.996133
Target:  5'- gCGUCCUGUCGGUCGagcACgGCgaugucaucauaugACGCg -3'
miRNA:   3'- -GUAGGACGGCUAGU---UGgCGaaa-----------UGUG- -5'
9612 3' -50.3 NC_002577.1 + 59165 0.66 0.995676
Target:  5'- -cUCC-GCUGGUUAGCCGU---ACACg -3'
miRNA:   3'- guAGGaCGGCUAGUUGGCGaaaUGUG- -5'
9612 3' -50.3 NC_002577.1 + 91981 0.66 0.994122
Target:  5'- gCGUUgaUGCCGA-CAGCCGCauccGCACa -3'
miRNA:   3'- -GUAGg-ACGGCUaGUUGGCGaaa-UGUG- -5'
9612 3' -50.3 NC_002577.1 + 79573 0.66 0.994122
Target:  5'- -uUCCaauaCGAUCAA-CGCUUUGCGCg -3'
miRNA:   3'- guAGGacg-GCUAGUUgGCGAAAUGUG- -5'
9612 3' -50.3 NC_002577.1 + 141586 0.67 0.992147
Target:  5'- cCAUCC-GcCCGAUUAACCccuGCaUUUACGCc -3'
miRNA:   3'- -GUAGGaC-GGCUAGUUGG---CG-AAAUGUG- -5'
9612 3' -50.3 NC_002577.1 + 3558 0.67 0.992147
Target:  5'- --gCUUGCCGGggagUAACCGUcaUGCACu -3'
miRNA:   3'- guaGGACGGCUa---GUUGGCGaaAUGUG- -5'
9612 3' -50.3 NC_002577.1 + 41767 0.67 0.992147
Target:  5'- -cUUCgggGCCGGUCAcgcuucuguuggGCCGCg--ACACg -3'
miRNA:   3'- guAGGa--CGGCUAGU------------UGGCGaaaUGUG- -5'
9612 3' -50.3 NC_002577.1 + 155751 0.67 0.992147
Target:  5'- cCAUCC-GcCCGAUUAACCccuGCaUUUACGCc -3'
miRNA:   3'- -GUAGGaC-GGCUAGUUGG---CG-AAAUGUG- -5'
9612 3' -50.3 NC_002577.1 + 130056 0.67 0.992147
Target:  5'- --gCUUGCCGGggagUAACCGUcaUGCACu -3'
miRNA:   3'- guaGGACGGCUa---GUUGGCGaaAUGUG- -5'
9612 3' -50.3 NC_002577.1 + 43845 0.67 0.990979
Target:  5'- aUAUCCUGCC-AUCAGCgCGUacgACAUu -3'
miRNA:   3'- -GUAGGACGGcUAGUUG-GCGaaaUGUG- -5'
9612 3' -50.3 NC_002577.1 + 160193 0.67 0.988236
Target:  5'- aCGUCCgaggGCCGGUCGcgcuCCGCggagccuugUUACGa -3'
miRNA:   3'- -GUAGGa---CGGCUAGUu---GGCGa--------AAUGUg -5'
9612 3' -50.3 NC_002577.1 + 137145 0.67 0.988236
Target:  5'- aCGUCCgaggGCCGGUCGcgcuCCGCggagccuugUUACGa -3'
miRNA:   3'- -GUAGGa---CGGCUAGUu---GGCGa--------AAUGUg -5'
9612 3' -50.3 NC_002577.1 + 1087 0.68 0.978562
Target:  5'- gCGUCCggacgUGCCGGaCAAUCGCg-UACGCg -3'
miRNA:   3'- -GUAGG-----ACGGCUaGUUGGCGaaAUGUG- -5'
9612 3' -50.3 NC_002577.1 + 132527 0.68 0.978561
Target:  5'- gCGUCCggacgUGCCGGaCAAUCGCg-UACGCg -3'
miRNA:   3'- -GUAGG-----ACGGCUaGUUGGCGaaAUGUG- -5'
9612 3' -50.3 NC_002577.1 + 59999 0.68 0.978561
Target:  5'- --aCUUGCCG-UUAACCGUUgcGCGCa -3'
miRNA:   3'- guaGGACGGCuAGUUGGCGAaaUGUG- -5'
9612 3' -50.3 NC_002577.1 + 69326 0.7 0.943557
Target:  5'- uCAUUCUGCCGAauaAGCCGCaggUGCGu -3'
miRNA:   3'- -GUAGGACGGCUag-UUGGCGaa-AUGUg -5'
9612 3' -50.3 NC_002577.1 + 85835 0.72 0.904249
Target:  5'- -cUCCUGCUGuacCAGCUGCgaaUUUACACg -3'
miRNA:   3'- guAGGACGGCua-GUUGGCG---AAAUGUG- -5'
9612 3' -50.3 NC_002577.1 + 72752 0.73 0.84431
Target:  5'- aGUCCUcGCCGcUCGACCGUUccgUAUACu -3'
miRNA:   3'- gUAGGA-CGGCuAGUUGGCGAa--AUGUG- -5'
9612 3' -50.3 NC_002577.1 + 46771 1.1 0.008622
Target:  5'- cCAUCCUGCCGAUCAACCGCUUUACACu -3'
miRNA:   3'- -GUAGGACGGCUAGUUGGCGAAAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.