miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9615 5' -55 NC_002577.1 + 6612 0.65 0.930551
Target:  5'- aGGGAUACGuGGUCAauCUUGGCGAu- -3'
miRNA:   3'- cUCCUAUGUuCCGGUc-GAGCCGCUuu -5'
9615 5' -55 NC_002577.1 + 154863 0.65 0.930551
Target:  5'- gGGGGggGgGGGGCgCGGgUCGGgGAAAg -3'
miRNA:   3'- -CUCCuaUgUUCCG-GUCgAGCCgCUUU- -5'
9615 5' -55 NC_002577.1 + 127001 0.65 0.930551
Target:  5'- aGGGAUACGuGGUCAauCUUGGCGAu- -3'
miRNA:   3'- cUCCUAUGUuCCGGUc-GAGCCGCUuu -5'
9615 5' -55 NC_002577.1 + 142475 0.65 0.930551
Target:  5'- gGGGGggGgGGGGCgCGGgUCGGgGAAAg -3'
miRNA:   3'- -CUCCuaUgUUCCG-GUCgAGCCgCUUU- -5'
9615 5' -55 NC_002577.1 + 10525 0.66 0.925155
Target:  5'- -cGGGUGCGGGGCCGGggggaaagUCGGgGGGc -3'
miRNA:   3'- cuCCUAUGUUCCGGUCg-------AGCCgCUUu -5'
9615 5' -55 NC_002577.1 + 122697 0.66 0.925155
Target:  5'- cGAGGGcauCGAacuGGCCgAGCUCGGCa--- -3'
miRNA:   3'- -CUCCUau-GUU---CCGG-UCGAGCCGcuuu -5'
9615 5' -55 NC_002577.1 + 123089 0.66 0.925155
Target:  5'- -cGGGUGCGGGGCCGGggggaaagUCGGgGGGc -3'
miRNA:   3'- cuCCUAUGUUCCGGUCg-------AGCCgCUUu -5'
9615 5' -55 NC_002577.1 + 10917 0.66 0.925155
Target:  5'- cGAGGGcauCGAacuGGCCgAGCUCGGCa--- -3'
miRNA:   3'- -CUCCUau-GUU---CCGG-UCGAGCCGcuuu -5'
9615 5' -55 NC_002577.1 + 80407 0.66 0.91951
Target:  5'- uGAGGAauuUAC-GGGCUuuuuAGCUCGGCa--- -3'
miRNA:   3'- -CUCCU---AUGuUCCGG----UCGAGCCGcuuu -5'
9615 5' -55 NC_002577.1 + 11559 0.66 0.901082
Target:  5'- cGGGAUcgcucccgACGGGGCUcucGUUCGGCGAu- -3'
miRNA:   3'- cUCCUA--------UGUUCCGGu--CGAGCCGCUuu -5'
9615 5' -55 NC_002577.1 + 122055 0.66 0.901082
Target:  5'- cGGGAUcgcucccgACGGGGCUcucGUUCGGCGAu- -3'
miRNA:   3'- cUCCUA--------UGUUCCGGu--CGAGCCGCUuu -5'
9615 5' -55 NC_002577.1 + 148340 0.67 0.887577
Target:  5'- -cGGGUACAGacgaauacgcGGCCcuccgAGCUgGGCGGAAu -3'
miRNA:   3'- cuCCUAUGUU----------CCGG-----UCGAgCCGCUUU- -5'
9615 5' -55 NC_002577.1 + 158868 0.67 0.865565
Target:  5'- gGAGGAcgGCGcGGCCgcGGC-CGGCGGGc -3'
miRNA:   3'- -CUCCUa-UGUuCCGG--UCGaGCCGCUUu -5'
9615 5' -55 NC_002577.1 + 138469 0.67 0.865565
Target:  5'- gGAGGAcgGCGcGGCCgcGGC-CGGCGGGc -3'
miRNA:   3'- -CUCCUa-UGUuCCGG--UCGaGCCGCUUu -5'
9615 5' -55 NC_002577.1 + 141178 0.68 0.85778
Target:  5'- -cGGggGCAcGGCCAcGCUCGGUGu-- -3'
miRNA:   3'- cuCCuaUGUuCCGGU-CGAGCCGCuuu -5'
9615 5' -55 NC_002577.1 + 156160 0.68 0.85778
Target:  5'- -cGGggGCAcGGCCAcGCUCGGUGu-- -3'
miRNA:   3'- cuCCuaUGUuCCGGU-CGAGCCGCuuu -5'
9615 5' -55 NC_002577.1 + 24462 0.68 0.849781
Target:  5'- uGAGGAUcgcACGAGGCguCAGCUCGcGCc--- -3'
miRNA:   3'- -CUCCUA---UGUUCCG--GUCGAGC-CGcuuu -5'
9615 5' -55 NC_002577.1 + 136738 0.68 0.849781
Target:  5'- gGGGGGUGgGGGGCCuugugcAGCU-GGCGAc- -3'
miRNA:   3'- -CUCCUAUgUUCCGG------UCGAgCCGCUuu -5'
9615 5' -55 NC_002577.1 + 160599 0.68 0.849781
Target:  5'- gGGGGGUGgGGGGCCuugugcAGCU-GGCGAc- -3'
miRNA:   3'- -CUCCUAUgUUCCGG------UCGAgCCGCUuu -5'
9615 5' -55 NC_002577.1 + 163229 0.68 0.841577
Target:  5'- cGGGGAUGCAGcGUgCGGCUCGGCc--- -3'
miRNA:   3'- -CUCCUAUGUUcCG-GUCGAGCCGcuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.