miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9620 3' -54.9 NC_002577.1 + 157208 0.66 0.939206
Target:  5'- cUCCCCGGcuggcGGGCcaccaacUCGAGCuCUUCUcgaGGg -3'
miRNA:   3'- -AGGGGCUu----CCCGa------AGUUCG-GAAGA---CC- -5'
9620 3' -54.9 NC_002577.1 + 140130 0.66 0.939206
Target:  5'- cUCCCCGGcuggcGGGCcaccaacUCGAGCuCUUCUcgaGGg -3'
miRNA:   3'- -AGGGGCUu----CCCGa------AGUUCG-GAAGA---CC- -5'
9620 3' -54.9 NC_002577.1 + 1798 0.66 0.934343
Target:  5'- cCCCCGAguAGGGUua-GGGCCUggcagGGg -3'
miRNA:   3'- aGGGGCU--UCCCGaagUUCGGAaga--CC- -5'
9620 3' -54.9 NC_002577.1 + 131815 0.66 0.934343
Target:  5'- cCCCCGAguAGGGUua-GGGCCUggcagGGg -3'
miRNA:   3'- aGGGGCU--UCCCGaagUUCGGAaga--CC- -5'
9620 3' -54.9 NC_002577.1 + 161110 0.69 0.825129
Target:  5'- cCCCCGggGGGC---GAGCCg---GGc -3'
miRNA:   3'- aGGGGCuuCCCGaagUUCGGaagaCC- -5'
9620 3' -54.9 NC_002577.1 + 136228 0.69 0.825129
Target:  5'- cCCCCGggGGGC---GAGCCg---GGc -3'
miRNA:   3'- aGGGGCuuCCCGaagUUCGGaagaCC- -5'
9620 3' -54.9 NC_002577.1 + 58197 0.7 0.779688
Target:  5'- cUCCCCGGAagaaauuGGGCggCc-GUCUUCUGGc -3'
miRNA:   3'- -AGGGGCUU-------CCCGaaGuuCGGAAGACC- -5'
9620 3' -54.9 NC_002577.1 + 70584 1.11 0.003117
Target:  5'- gUCCCCGAAGGGCUUCAAGCCUUCUGGu -3'
miRNA:   3'- -AGGGGCUUCCCGAAGUUCGGAAGACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.