miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9621 3' -50.8 NC_002577.1 + 122283 0.66 0.995398
Target:  5'- cGGACGCaagGUggCGGCAgagGAUAAGCGAUc -3'
miRNA:   3'- -UCUGUG---CGa-GCCGUga-CUAUUUGCUG- -5'
9621 3' -50.8 NC_002577.1 + 11331 0.66 0.995398
Target:  5'- cGGACGCaagGUggCGGCAgagGAUAAGCGAUc -3'
miRNA:   3'- -UCUGUG---CGa-GCCGUga-CUAUUUGCUG- -5'
9621 3' -50.8 NC_002577.1 + 53520 0.66 0.995398
Target:  5'- cGACAUGUcCGGCGCgcaaGAaaacugcucgUAGACGAUa -3'
miRNA:   3'- uCUGUGCGaGCCGUGa---CU----------AUUUGCUG- -5'
9621 3' -50.8 NC_002577.1 + 161051 0.66 0.995398
Target:  5'- cGGCgccggACGuUUCGGCGCUGAcc-GCGGCc -3'
miRNA:   3'- uCUG-----UGC-GAGCCGUGACUauuUGCUG- -5'
9621 3' -50.8 NC_002577.1 + 136287 0.66 0.995398
Target:  5'- cGGCgccggACGuUUCGGCGCUGAcc-GCGGCc -3'
miRNA:   3'- uCUG-----UGC-GAGCCGUGACUauuUGCUG- -5'
9621 3' -50.8 NC_002577.1 + 68038 0.66 0.995398
Target:  5'- cGGCAgGCgcgUGGCugUGcAUGucuACGGCg -3'
miRNA:   3'- uCUGUgCGa--GCCGugAC-UAUu--UGCUG- -5'
9621 3' -50.8 NC_002577.1 + 152948 0.66 0.994639
Target:  5'- cGGC-CGCUCaucGCACaGAgcGACGACg -3'
miRNA:   3'- uCUGuGCGAGc--CGUGaCUauUUGCUG- -5'
9621 3' -50.8 NC_002577.1 + 152608 0.66 0.994639
Target:  5'- -cGCACGCUCGGUgaACUGcagcGCGGg -3'
miRNA:   3'- ucUGUGCGAGCCG--UGACuauuUGCUg -5'
9621 3' -50.8 NC_002577.1 + 50611 0.66 0.993781
Target:  5'- uGGA-AUGUUCgGGCACUGAUAGGuuagaaucCGACa -3'
miRNA:   3'- -UCUgUGCGAG-CCGUGACUAUUU--------GCUG- -5'
9621 3' -50.8 NC_002577.1 + 55030 0.66 0.993781
Target:  5'- gAGugGCGUUCGGUACaUGGUAc-CGuACu -3'
miRNA:   3'- -UCugUGCGAGCCGUG-ACUAUuuGC-UG- -5'
9621 3' -50.8 NC_002577.1 + 123039 0.66 0.991736
Target:  5'- cGGACGCGCgUCGGUccguuuCUGcccuuGCGGCg -3'
miRNA:   3'- -UCUGUGCG-AGCCGu-----GACuauu-UGCUG- -5'
9621 3' -50.8 NC_002577.1 + 10575 0.66 0.991736
Target:  5'- cGGACGCGCgUCGGUccguuuCUGcccuuGCGGCg -3'
miRNA:   3'- -UCUGUGCG-AGCCGu-----GACuauu-UGCUG- -5'
9621 3' -50.8 NC_002577.1 + 79321 0.67 0.990532
Target:  5'- uGGUACGUUCGGCACguaacucGAUAcucGCGGCu -3'
miRNA:   3'- uCUGUGCGAGCCGUGa------CUAUu--UGCUG- -5'
9621 3' -50.8 NC_002577.1 + 4920 0.67 0.989193
Target:  5'- cAGAgAUGCgUCGGCGCgcGAgcgAAGCGAa -3'
miRNA:   3'- -UCUgUGCG-AGCCGUGa-CUa--UUUGCUg -5'
9621 3' -50.8 NC_002577.1 + 128694 0.67 0.989193
Target:  5'- cAGAgAUGCgUCGGCGCgcGAgcgAAGCGAa -3'
miRNA:   3'- -UCUgUGCG-AGCCGUGa-CUa--UUUGCUg -5'
9621 3' -50.8 NC_002577.1 + 159648 0.68 0.975306
Target:  5'- gGGGCGuCGCauuUCGGCGCUGGcu-GCaGACg -3'
miRNA:   3'- -UCUGU-GCG---AGCCGUGACUauuUG-CUG- -5'
9621 3' -50.8 NC_002577.1 + 137690 0.68 0.975306
Target:  5'- gGGGCGuCGCauuUCGGCGCUGGcu-GCaGACg -3'
miRNA:   3'- -UCUGU-GCG---AGCCGUGACUauuUG-CUG- -5'
9621 3' -50.8 NC_002577.1 + 47467 0.69 0.969624
Target:  5'- uGGACACGa---GCACUGAUAAA-GACg -3'
miRNA:   3'- -UCUGUGCgagcCGUGACUAUUUgCUG- -5'
9621 3' -50.8 NC_002577.1 + 143239 0.69 0.966458
Target:  5'- gAGACGCuCUCGGCGCaGAgcgucuACGAa -3'
miRNA:   3'- -UCUGUGcGAGCCGUGaCUauu---UGCUg -5'
9621 3' -50.8 NC_002577.1 + 35912 0.69 0.966457
Target:  5'- gAGGCGCGCUCGGa------GAACGGCg -3'
miRNA:   3'- -UCUGUGCGAGCCgugacuaUUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.